Variant report

Variant	rs74056356
Chromosome Location	chr14:65111438-65111439
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65005413..65007156-chr14:65110465..65112406,2	MCF-7	breast:
2	chr14:65102703..65104469-chr14:65109001..65111503,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 23 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:22)

rs_ID	r²[population]
rs11623381	0.94[AFR][1000 genomes]
rs45467597	1.00[AMR][1000 genomes]
rs45544744	1.00[AMR][1000 genomes]
rs55919712	1.00[AMR][1000 genomes]
rs56357777	1.00[AMR][1000 genomes]
rs57451210	0.94[AFR][1000 genomes]
rs57473635	1.00[AMR][1000 genomes]
rs58016138	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60458560	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60591932	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs60835654	1.00[AMR][1000 genomes]
rs61375379	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056318	1.00[AMR][1000 genomes]
rs74056329	0.94[AFR][1000 genomes]
rs74056347	1.00[AMR][1000 genomes]
rs74056349	1.00[AMR][1000 genomes]
rs74056357	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes]
rs74056360	1.00[AMR][1000 genomes]
rs74056438	1.00[AMR][1000 genomes]
rs74056444	1.00[AMR][1000 genomes]
rs74056454	1.00[AMR][1000 genomes]
rs74056455	1.00[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:41 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65099400-65111600	Weak transcription	Osteobl	bone
2	chr14:65103800-65111600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr14:65103800-65111800	Weak transcription	Fetal Heart	heart
4	chr14:65103800-65112400	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr14:65106800-65111600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
6	chr14:65106800-65111600	Weak transcription	NHLF	lung
7	chr14:65106800-65112600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
8	chr14:65106800-65112600	Weak transcription	H9 Cell Line	embryonic stem cell
9	chr14:65106800-65115400	Weak transcription	Fetal Intestine Small	intestine
10	chr14:65107000-65111800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
11	chr14:65107000-65112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
12	chr14:65107000-65112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
13	chr14:65108000-65111800	Weak transcription	HMEC	breast
14	chr14:65108200-65112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr14:65108800-65111800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
16	chr14:65110200-65111600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
17	chr14:65110600-65116200	Enhancers	Placenta	Placenta
18	chr14:65111000-65113200	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
19	chr14:65111000-65113400	Enhancers	H1 Cell Line	embryonic stem cell
20	chr14:65111200-65111800	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
21	chr14:65111200-65112000	Enhancers	ES-I3 Cell Line	embryonic stem cell
22	chr14:65111200-65112000	Enhancers	HUES6 Cell Line	embryonic stem cell
23	chr14:65111200-65112000	Enhancers	iPS-20b Cell Line	embryonic stem cell
24	chr14:65111200-65112000	Enhancers	A549	lung
25	chr14:65111200-65112400	Enhancers	Colon Smooth Muscle	Colon
26	chr14:65111200-65113200	Enhancers	Placenta Amnion	Placenta Amnion
27	chr14:65111200-65113200	Enhancers	HSMMtube	muscle
28	chr14:65111200-65113400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr14:65111400-65111600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr14:65111400-65111600	Weak transcription	HSMM	muscle
31	chr14:65111400-65112000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
32	chr14:65111400-65112000	Enhancers	HUES48 Cell Line	embryonic stem cell
33	chr14:65111400-65112200	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
34	chr14:65111400-65112200	Enhancers	iPS-15b Cell Line	embryonic stem cell
35	chr14:65111400-65113200	Enhancers	Muscle Satellite Cultured Cells	--
36	chr14:65111400-65113200	Enhancers	Foreskin Fibroblast Primary Cells skin01	Skin
37	chr14:65111400-65113200	Enhancers	Fetal Stomach	stomach
38	chr14:65111400-65113200	Enhancers	Ovary	ovary
39	chr14:65111400-65113200	Enhancers	Rectal Smooth Muscle	rectum
40	chr14:65111400-65113200	Enhancers	NH-A	brain
41	chr14:65111400-65113400	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links