Variant report

Variant	rs11622028
Chromosome Location	chr14:65057545-65057546
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65046215..65048699-chr14:65056837..65059085,2	K562	blood:

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:36)

rs_ID	r²[population]
rs10891	0.85[AMR][1000 genomes]
rs11158553	1.00[CHB][hapmap]
rs11158556	1.00[CHB][hapmap]
rs11620680	1.00[CHB][hapmap];0.85[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11621195	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11621442	0.81[EUR][1000 genomes]
rs11622591	1.00[AFR][1000 genomes]
rs11623381	0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11624854	0.81[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11627525	1.00[ASW][hapmap];1.00[MKK][hapmap];0.81[TSI][hapmap];1.00[AFR][1000 genomes]
rs11627602	0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11628524	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs11629135	0.90[TSI][hapmap];0.81[EUR][1000 genomes]
rs17767074	1.00[CHB][hapmap]
rs17824827	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs2123456	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2123457	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2236222	0.90[TSI][hapmap]
rs35287494	1.00[CHB][hapmap]
rs3742609	1.00[ASW][hapmap];1.00[TSI][hapmap];0.81[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs45511097	0.94[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55766182	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs55791907	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56007903	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56403644	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs57451210	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58644746	0.85[AMR][1000 genomes]
rs59587911	1.00[AFR][1000 genomes];0.94[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7146831	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs723594	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[CHD][hapmap];1.00[GIH][hapmap];1.00[MEX][hapmap];1.00[TSI][hapmap];0.85[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs73269771	0.98[EUR][1000 genomes]
rs74056329	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs74056334	0.81[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs74056445	0.83[EUR][1000 genomes]
rs8003567	0.90[TSI][hapmap]
rs8012229	1.00[AFR][1000 genomes];0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65040200-65058000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65047800-65059000	Weak transcription	Gastric	stomach
3	chr14:65048800-65068400	Weak transcription	Pancreas	Pancrea
4	chr14:65057000-65057600	Enhancers	Fetal Adrenal Gland	Adrenal Gland

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links