Variant report

Variant	rs56007903
Chromosome Location	chr14:64966575-64966576
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	WRNIP1	chr14:64966547-64966775	GM12878	blood:	n/a	n/a

Variant related genes	Relation type
ZBTB1	TF binding region

Extended variants
information (count: 33 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10891	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs11620680	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621195	0.94[AMR][1000 genomes];0.84[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621442	0.82[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs11622028	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11622591	0.80[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11623381	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11624854	0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11627525	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs11627602	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11628440	0.93[EUR][1000 genomes]
rs11628524	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs11629135	0.98[EUR][1000 genomes]
rs17824827	0.87[ASN][1000 genomes]
rs2123456	0.89[AMR][1000 genomes];1.00[ASN][1000 genomes]
rs2123457	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2236222	0.82[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs3742609	0.86[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs45511097	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55791907	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56403644	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs57451210	0.84[AMR][1000 genomes]
rs58644746	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs59587911	0.89[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7146831	0.94[AMR][1000 genomes];0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs723594	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs73269771	0.81[EUR][1000 genomes]
rs74056329	0.84[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs74056334	0.81[EUR][1000 genomes]
rs74056445	1.00[EUR][1000 genomes]
rs8003567	0.93[EUR][1000 genomes]
rs8007506	0.87[ASN][1000 genomes]
rs8012229	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes]

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64933200-64968400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
2	chr14:64933400-64968200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:64936800-64968400	Weak transcription	Fetal Brain Male	brain
4	chr14:64950000-64968200	Weak transcription	Colonic Mucosa	Colon
5	chr14:64950600-64967800	Weak transcription	HUVEC	blood vessel
6	chr14:64952200-64968000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
7	chr14:64953200-64968200	Weak transcription	Placenta Amnion	Placenta Amnion
8	chr14:64954600-64966600	Weak transcription	HepG2	liver
9	chr14:64954600-64968000	Weak transcription	Rectal Smooth Muscle	rectum
10	chr14:64954600-64968200	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
11	chr14:64954600-64968400	Weak transcription	Esophagus	oesophagus
12	chr14:64954600-64968400	Weak transcription	Gastric	stomach
13	chr14:64954600-64968400	Weak transcription	Pancreas	Pancrea
14	chr14:64954800-64968200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr14:64954800-64968200	Weak transcription	HSMMtube	muscle
16	chr14:64954800-64968400	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr14:64954800-64968400	Weak transcription	H9 Cell Line	embryonic stem cell
18	chr14:64954800-64968400	Weak transcription	Sigmoid Colon	Sigmoid Colon
19	chr14:64954800-64968400	Weak transcription	Spleen	Spleen
20	chr14:64954800-64969600	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:64955000-64968000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
22	chr14:64955000-64968200	Weak transcription	Brain Substantia Nigra	brain
23	chr14:64955200-64967800	Weak transcription	NHDF-Ad	bronchial
24	chr14:64955200-64968000	Weak transcription	Brain Hippocampus Middle	brain
25	chr14:64955200-64968000	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr14:64955200-64968200	Weak transcription	Right Ventricle	heart
27	chr14:64955400-64966600	Weak transcription	Duodenum Mucosa	Duodenum
28	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 29	rectum
29	chr14:64955400-64967800	Weak transcription	Rectal Mucosa Donor 31	rectum
30	chr14:64955400-64968200	Weak transcription	Fetal Kidney	kidney
31	chr14:64955600-64968200	Weak transcription	Placenta	Placenta
32	chr14:64955600-64968200	Weak transcription	NHLF	lung
33	chr14:64955800-64968200	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:64955800-64968400	Weak transcription	Brain Inferior Temporal Lobe	brain
35	chr14:64956000-64967800	Weak transcription	Brain Germinal Matrix	brain
36	chr14:64956000-64968400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
37	chr14:64956200-64968000	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
38	chr14:64956200-64968200	Weak transcription	Primary monocytes fromperipheralblood	blood
39	chr14:64956200-64968200	Weak transcription	Fetal Brain Female	brain
40	chr14:64956200-64968600	Weak transcription	iPS-20b Cell Line	embryonic stem cell
41	chr14:64956400-64968200	Weak transcription	HSMM	muscle
42	chr14:64956600-64968400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
43	chr14:64956800-64968800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
44	chr14:64957200-64967800	Weak transcription	Liver	Liver
45	chr14:64957400-64967200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
46	chr14:64957600-64968400	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
47	chr14:64958000-64968200	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
48	chr14:64958400-64967200	Weak transcription	Psoas Muscle	Psoas
49	chr14:64958400-64967800	Weak transcription	Stomach Smooth Muscle	stomach
50	chr14:64958600-64967400	Weak transcription	Primary B cells from cord blood	blood

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