Variant report

Variant	rs8007506
Chromosome Location	chr14:65017961-65017962
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Variant related genes	Relation type
ENSG00000089775	Chromatin interaction
ENSG00000126804	Chromatin interaction
ENSG00000101144	Chromatin interaction
ENSG00000126803	Chromatin interaction
ENSG00000259116	Chromatin interaction

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11620680	0.87[ASN][1000 genomes]
rs11621195	0.87[ASN][1000 genomes]
rs11624854	0.87[ASN][1000 genomes]
rs11627602	0.87[ASN][1000 genomes]
rs17824827	1.00[ASN][1000 genomes]
rs2123456	0.87[ASN][1000 genomes]
rs2123457	0.87[ASN][1000 genomes]
rs35287494	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs3818239	0.91[EUR][1000 genomes]
rs45511097	0.87[ASN][1000 genomes]
rs55791907	0.87[ASN][1000 genomes]
rs56007903	0.87[ASN][1000 genomes]
rs56403644	0.87[ASN][1000 genomes]
rs57503834	0.87[EUR][1000 genomes]
rs7146831	0.87[ASN][1000 genomes]
rs727757	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs73269771	0.84[AMR][1000 genomes]
rs74056334	0.80[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:8 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv564907	chr14:65011509-65018663	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region	6 gene(s)	inside rSNPs	diseases
2	esv12236	chr14:65014784-65020415	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
3	nsv442343	chr14:65015653-65019529	Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
4	nsv564909	chr14:65015655-65020267	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	6 gene(s)	inside rSNPs	diseases
5	esv1794640	chr14:65017474-65020267	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent/Poised TSS Flanking Active TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
6	esv1796790	chr14:65017474-65020267	Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
7	esv1797409	chr14:65017474-65020267	Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Bivalent Enhancer Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
8	esv1802157	chr14:65017474-65020267	Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Active TSS	Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:19 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65016800-65018400	Enhancers	Brain Substantia Nigra	brain
2	chr14:65017000-65018000	Enhancers	Brain Angular Gyrus	brain
3	chr14:65017200-65018400	Enhancers	Hela-S3	cervix
4	chr14:65017200-65021200	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
5	chr14:65017200-65021200	Weak transcription	Gastric	stomach
6	chr14:65017400-65018000	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
7	chr14:65017400-65018000	Enhancers	Brain Germinal Matrix	brain
8	chr14:65017400-65018000	Enhancers	Stomach Mucosa	stomach
9	chr14:65017400-65018600	Enhancers	Brain Hippocampus Middle	brain
10	chr14:65017400-65021000	Weak transcription	Placenta	Placenta
11	chr14:65017400-65021200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:65017400-65021200	Weak transcription	Pancreas	Pancrea
13	chr14:65017400-65027800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
14	chr14:65017600-65018000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
15	chr14:65017600-65018000	Enhancers	Pancreatic Islets	Pancreatic Islet
16	chr14:65017600-65018000	Enhancers	Rectal Mucosa Donor 31	rectum
17	chr14:65017600-65021200	Weak transcription	Duodenum Mucosa	Duodenum
18	chr14:65017600-65021200	Weak transcription	Rectal Mucosa Donor 29	rectum
19	chr14:65017800-65018200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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