Variant report

Variant	rs727757
Chromosome Location	chr14:64987647-64987648
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64986499..64988799-chr14:64989705..64991452,2	MCF-7	breast:
2	chr14:64981930..64983904-chr14:64987033..64989897,3	MCF-7	breast:
3	chr14:64982652..64984582-chr14:64985749..64988084,2	K562	blood:
4	chr14:64987035..64989680-chr14:64995490..64997427,2	MCF-7	breast:

Extended variants
information (count: 8 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:7)

rs_ID	r²[population]
rs10891	0.93[ASN][1000 genomes]
rs35287494	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3818239	0.91[EUR][1000 genomes]
rs57503834	0.87[EUR][1000 genomes]
rs58644746	0.93[ASN][1000 genomes]
rs74056445	0.93[ASN][1000 genomes]
rs8007506	0.92[AMR][1000 genomes];1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64988400	Weak transcription	H9 Cell Line	embryonic stem cell
2	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
3	chr14:64973200-64987800	Weak transcription	Fetal Muscle Trunk	muscle
4	chr14:64974400-64988200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
5	chr14:64974400-64988400	Weak transcription	Stomach Smooth Muscle	stomach
6	chr14:64974800-64988600	Weak transcription	Cortex derived primary cultured neurospheres	brain
7	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
8	chr14:64974800-65006000	Weak transcription	Ovary	ovary
9	chr14:64975000-64988400	Weak transcription	HSMMtube	muscle
10	chr14:64975200-64988200	Weak transcription	Fetal Muscle Leg	muscle
11	chr14:64975200-64988600	Weak transcription	Fetal Stomach	stomach
12	chr14:64976000-64988400	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
13	chr14:64976000-64995400	Weak transcription	Gastric	stomach
14	chr14:64976000-64996600	Weak transcription	Esophagus	oesophagus
15	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
16	chr14:64976200-64988200	Weak transcription	H1 Cell Line	embryonic stem cell
17	chr14:64976200-64988200	Weak transcription	Fetal Intestine Large	intestine
18	chr14:64976200-64988200	Weak transcription	Placenta	Placenta
19	chr14:64976200-64988600	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
20	chr14:64976200-64991800	Weak transcription	Stomach Mucosa	stomach
21	chr14:64977600-64988200	Weak transcription	Right Ventricle	heart
22	chr14:64977800-64988400	Weak transcription	iPS-20b Cell Line	embryonic stem cell
23	chr14:64977800-64991600	Weak transcription	Placenta Amnion	Placenta Amnion
24	chr14:64977800-64992200	Weak transcription	Colonic Mucosa	Colon
25	chr14:64977800-64993600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
26	chr14:64978000-64988600	Weak transcription	Fetal Kidney	kidney
27	chr14:64978200-64987800	Weak transcription	HUES64 Cell Line	embryonic stem cell
28	chr14:64978200-64988200	Weak transcription	HUES6 Cell Line	embryonic stem cell
29	chr14:64978200-64988200	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
30	chr14:64978200-64988400	Weak transcription	HUES48 Cell Line	embryonic stem cell
31	chr14:64978200-64988400	Weak transcription	Fetal Lung	lung
32	chr14:64978200-64989400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
33	chr14:64978200-65006000	Weak transcription	Brain Cingulate Gyrus	brain
34	chr14:64978400-64988400	Weak transcription	Rectal Mucosa Donor 29	rectum
35	chr14:64978400-64988400	Weak transcription	HepG2	liver
36	chr14:64978400-64988600	Weak transcription	iPS-18 Cell Line	embryonic stem cell
37	chr14:64978400-64992200	Weak transcription	Brain Inferior Temporal Lobe	brain
38	chr14:64978400-64992600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
39	chr14:64978600-64988200	Weak transcription	Primary hematopoietic stem cells	blood
40	chr14:64978600-64996200	Weak transcription	Brain Angular Gyrus	brain
41	chr14:64978800-64988200	Weak transcription	Primary monocytes fromperipheralblood	blood
42	chr14:64979200-64988200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
43	chr14:64979200-64988200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
44	chr14:64979200-64988200	Weak transcription	Duodenum Mucosa	Duodenum
45	chr14:64979200-64988200	Weak transcription	Duodenum Smooth Muscle	Duodenum
46	chr14:64979200-64988200	Weak transcription	HMEC	breast
47	chr14:64979200-64988800	Weak transcription	Spleen	Spleen
48	chr14:64979200-65005800	Weak transcription	Brain Anterior Caudate	brain
49	chr14:64979400-64988200	Weak transcription	Primary B cells from cord blood	blood
50	chr14:64979400-64988200	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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