Variant report

Variant	rs10891
Chromosome Location	chr14:64990626-64990627
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:64990264..64993263-chr14:64995961..64997529,2	MCF-7	breast:
2	chr14:64969260..64973138-chr14:64990315..64995428,5	MCF-7	breast:
3	chr14:64986499..64988799-chr14:64989705..64991452,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000126804	Chromatin interaction
ENSG00000089775	Chromatin interaction

Extended variants
information (count: 35 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11620680	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs11621195	0.85[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11621442	0.95[EUR][1000 genomes]
rs11622028	0.85[AMR][1000 genomes]
rs11622591	0.89[EUR][1000 genomes]
rs11623381	1.00[AMR][1000 genomes]
rs11624854	0.81[AFR][1000 genomes];0.95[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs11627525	0.86[EUR][1000 genomes]
rs11627602	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11628440	0.89[EUR][1000 genomes]
rs11628524	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11629135	0.95[EUR][1000 genomes]
rs2123456	0.80[AMR][1000 genomes]
rs2123457	0.90[AMR][1000 genomes]
rs2236222	0.93[EUR][1000 genomes]
rs35287494	0.93[ASN][1000 genomes]
rs3742609	0.96[EUR][1000 genomes]
rs45511097	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs55791907	0.85[AMR][1000 genomes]
rs56007903	0.80[AMR][1000 genomes];0.96[EUR][1000 genomes]
rs56403644	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs57451210	0.95[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs58644746	0.81[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59587911	0.90[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7146831	0.85[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs723594	0.90[AMR][1000 genomes]
rs727757	0.93[ASN][1000 genomes]
rs73269771	0.91[AMR][1000 genomes]
rs74056329	0.95[AMR][1000 genomes]
rs74056334	0.95[AMR][1000 genomes]
rs74056444	0.90[AFR][1000 genomes]
rs74056445	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8003567	0.89[EUR][1000 genomes]
rs8012229	0.95[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv521823	chr14:64969342-64995694	Enhancers Weak transcription Active TSS Flanking Active TSS Genic enhancers Strong transcription Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	56 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:117 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:64972800-64991600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
2	chr14:64974800-64999400	Weak transcription	Fetal Brain Male	brain
3	chr14:64974800-65006000	Weak transcription	Ovary	ovary
4	chr14:64976000-64995400	Weak transcription	Gastric	stomach
5	chr14:64976000-64996600	Weak transcription	Esophagus	oesophagus
6	chr14:64976000-65006000	Weak transcription	Brain Germinal Matrix	brain
7	chr14:64976200-64991800	Weak transcription	Stomach Mucosa	stomach
8	chr14:64977800-64991600	Weak transcription	Placenta Amnion	Placenta Amnion
9	chr14:64977800-64992200	Weak transcription	Colonic Mucosa	Colon
10	chr14:64977800-64993600	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
11	chr14:64978200-65006000	Weak transcription	Brain Cingulate Gyrus	brain
12	chr14:64978400-64992200	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr14:64978400-64992600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
14	chr14:64978600-64996200	Weak transcription	Brain Angular Gyrus	brain
15	chr14:64979200-65005800	Weak transcription	Brain Anterior Caudate	brain
16	chr14:64982000-65005800	Weak transcription	Fetal Heart	heart
17	chr14:64983400-64993000	Weak transcription	Psoas Muscle	Psoas
18	chr14:64984800-64996200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr14:64985000-64991000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
20	chr14:64987000-64993800	Strong transcription	Dnd41	blood
21	chr14:64987400-64993600	Strong transcription	Monocytes-CD14+_RO01746	blood
22	chr14:64987600-64993800	Strong transcription	Fetal Thymus	thymus
23	chr14:64987800-64993600	Strong transcription	Osteobl	bone
24	chr14:64987800-64993800	Strong transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr14:64987800-65005000	Weak transcription	Pancreas	Pancrea
26	chr14:64988000-64992600	Weak transcription	Fetal Intestine Small	intestine
27	chr14:64988200-64991000	Strong transcription	Primary monocytes fromperipheralblood	blood
28	chr14:64988200-64991000	Strong transcription	Primary T cells fromperipheralblood	blood
29	chr14:64988200-64991400	Strong transcription	NHDF-Ad	bronchial
30	chr14:64988200-64991600	Strong transcription	A549	lung
31	chr14:64988200-64991800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
32	chr14:64988200-64992000	Strong transcription	Primary B cells from peripheral blood	blood
33	chr14:64988200-64992400	Strong transcription	H9 Derived Neuron Cultured Cells	ES cell derived
34	chr14:64988200-64993600	Strong transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
35	chr14:64988200-64993600	Strong transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
36	chr14:64988200-64993600	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
37	chr14:64988200-64993800	Strong transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
38	chr14:64988200-64993800	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
39	chr14:64988200-64993800	Strong transcription	Foreskin Melanocyte Primary Cells skin03	Skin
40	chr14:64988200-64993800	Strong transcription	HSMM	muscle
41	chr14:64988400-64991800	Strong transcription	Rectal Mucosa Donor 29	rectum
42	chr14:64988400-64992200	Strong transcription	NH-A	brain
43	chr14:64988600-64990800	Genic enhancers	Primary T helper memory cells from peripheral blood 1	blood
44	chr14:64988600-64991000	Strong transcription	ES-UCSF4 Cell Line	embryonic stem cell
45	chr14:64988600-64992200	Strong transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
46	chr14:64988800-64993400	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
47	chr14:64989200-64993800	Strong transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
48	chr14:64989200-65006000	Weak transcription	Cortex derived primary cultured neurospheres	brain
49	chr14:64989800-64991800	Weak transcription	Placenta	Placenta
50	chr14:64989800-64992400	Weak transcription	Colon Smooth Muscle	Colon

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