Variant report

Variant	rs17824827
Chromosome Location	chr14:65032278-65032279
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr14:65006252..65007811-chr14:65031614..65033859,2	MCF-7	breast:
2	chr14:65024435..65026477-chr14:65030670..65033087,2	MCF-7	breast:
3	chr14:65005508..65008308-chr14:65032018..65035005,3	MCF-7	breast:

Variant related genes	Relation type
ENSG00000259116	Chromatin interaction
ENSG00000126803	Chromatin interaction

Extended variants
information (count: 19 )
Associated
traits (count: 1 )

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11158553	1.00[CHB][hapmap]
rs11158556	1.00[CHB][hapmap]
rs11620680	1.00[CHB][hapmap];0.87[ASN][1000 genomes]
rs11621195	0.87[ASN][1000 genomes]
rs11624854	0.87[ASN][1000 genomes]
rs11627602	0.87[ASN][1000 genomes]
rs17767074	1.00[CHB][hapmap]
rs2123456	0.87[ASN][1000 genomes]
rs2123457	0.87[ASN][1000 genomes]
rs35287494	0.91[CEU][hapmap];1.00[CHB][hapmap];1.00[MEX][hapmap]
rs3818239	0.91[CEU][hapmap]
rs45511097	0.87[ASN][1000 genomes]
rs55791907	0.87[ASN][1000 genomes]
rs56007903	0.87[ASN][1000 genomes]
rs56403644	0.87[ASN][1000 genomes]
rs7146831	0.87[ASN][1000 genomes]
rs723594	1.00[CHB][hapmap];1.00[CHD][hapmap]
rs8007506	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

mRNA abundance (count:1)

SNP	Gene	Cis/trans	Tissue	Source
rs17824827	ZBTB25	cis	cerebellum	SCAN

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65021400-65033400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65021600-65047600	Weak transcription	Pancreas	Pancrea
3	chr14:65023400-65033400	Weak transcription	HUES6 Cell Line	embryonic stem cell
4	chr14:65028000-65033400	Weak transcription	Psoas Muscle	Psoas
5	chr14:65028200-65033400	Weak transcription	Primary hematopoietic stem cells short term culture	blood
6	chr14:65028200-65033400	Weak transcription	A549	lung
7	chr14:65028200-65039400	Weak transcription	Fetal Adrenal Gland	Adrenal Gland
8	chr14:65028400-65033400	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
9	chr14:65028400-65033400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:65028800-65033400	Weak transcription	Hela-S3	cervix
11	chr14:65029200-65033200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:65029200-65033200	Enhancers	Brain Substantia Nigra	brain
13	chr14:65029200-65035800	Weak transcription	Placenta	Placenta
14	chr14:65029400-65033200	Weak transcription	Adipose Nuclei	Adipose
15	chr14:65029400-65033200	Weak transcription	Right Atrium	heart
16	chr14:65029400-65035600	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:65029400-65039400	Weak transcription	Sigmoid Colon	Sigmoid Colon
18	chr14:65030400-65033200	Weak transcription	Brain Angular Gyrus	brain
19	chr14:65030600-65032400	Enhancers	Brain Cingulate Gyrus	brain
20	chr14:65030600-65033200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
21	chr14:65030600-65033200	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr14:65030600-65039600	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
23	chr14:65030800-65033200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
24	chr14:65030800-65033400	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
25	chr14:65030800-65034600	Enhancers	Brain Hippocampus Middle	brain
26	chr14:65031000-65033200	Weak transcription	Cortex derived primary cultured neurospheres	brain
27	chr14:65031000-65033200	Weak transcription	Skeletal Muscle Female	skeletal muscle
28	chr14:65031000-65035800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
29	chr14:65031000-65035800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
30	chr14:65031000-65039000	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr14:65031200-65033400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
32	chr14:65031600-65033400	Weak transcription	HUES48 Cell Line	embryonic stem cell
33	chr14:65031600-65033400	Weak transcription	Breast Myoepithelial Primary Cells	Breast
34	chr14:65031600-65033400	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
35	chr14:65031800-65033200	Weak transcription	Brain Anterior Caudate	brain
36	chr14:65032200-65033200	Weak transcription	Brain Inferior Temporal Lobe	brain
37	chr14:65032200-65033200	Weak transcription	Colon Smooth Muscle	Colon

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