Variant report

Variant	rs55766182
Chromosome Location	chr14:65108658-65108659
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65007817..65010307-chr14:65107845..65109704,2	MCF-7	breast:
2	chr14:65106953..65109220-chr14:65116846..65120872,3	MCF-7	breast:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11621195	1.00[AFR][1000 genomes]
rs11622028	1.00[AFR][1000 genomes];0.81[EUR][1000 genomes]
rs11622591	1.00[AFR][1000 genomes]
rs11623381	0.83[EUR][1000 genomes]
rs11627525	1.00[AFR][1000 genomes]
rs11628524	1.00[AFR][1000 genomes]
rs2123456	1.00[AFR][1000 genomes]
rs2123457	1.00[AFR][1000 genomes];0.83[EUR][1000 genomes]
rs55791907	0.81[EUR][1000 genomes]
rs56403644	1.00[AFR][1000 genomes]
rs59587911	1.00[AFR][1000 genomes]
rs7146831	1.00[AFR][1000 genomes]
rs73269771	0.83[EUR][1000 genomes]
rs74056329	0.81[EUR][1000 genomes]
rs74056334	0.83[EUR][1000 genomes]
rs8012229	1.00[AFR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65099400-65111600	Weak transcription	Osteobl	bone
2	chr14:65103000-65109600	Enhancers	Placenta	Placenta
3	chr14:65103400-65111000	Weak transcription	H1 Cell Line	embryonic stem cell
4	chr14:65103800-65111400	Weak transcription	Rectal Smooth Muscle	rectum
5	chr14:65103800-65111600	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
6	chr14:65103800-65111800	Weak transcription	Fetal Heart	heart
7	chr14:65103800-65112400	Weak transcription	Rectal Mucosa Donor 29	rectum
8	chr14:65104000-65108800	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:65104200-65108800	Enhancers	Foreskin Keratinocyte Primary Cells skin02	Skin
10	chr14:65105000-65110400	Weak transcription	HSMM	muscle
11	chr14:65106800-65111600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
12	chr14:65106800-65111600	Weak transcription	NHLF	lung
13	chr14:65106800-65112600	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
14	chr14:65106800-65112600	Weak transcription	H9 Cell Line	embryonic stem cell
15	chr14:65106800-65115400	Weak transcription	Fetal Intestine Small	intestine
16	chr14:65107000-65111200	Weak transcription	Placenta Amnion	Placenta Amnion
17	chr14:65107000-65111800	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
18	chr14:65107000-65112000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
19	chr14:65107000-65112000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
20	chr14:65108000-65111800	Weak transcription	HMEC	breast
21	chr14:65108200-65112000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
22	chr14:65108400-65108800	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
23	chr14:65108600-65108800	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:65108600-65109400	Enhancers	A549	lung

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