Variant report

Variant	rs4998805
Chromosome Location	chr14:65124096-65124097
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11158553	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158556	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621301	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622587	0.80[AFR][1000 genomes];0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622634	1.00[ASN][1000 genomes]
rs11623179	0.82[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs11623281	0.87[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs11623902	1.00[ASN][1000 genomes]
rs11625717	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11627908	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs11848823	0.93[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4346134	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406982	1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166804	0.97[AMR][1000 genomes];0.93[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148722	0.89[EUR][1000 genomes]
rs7152924	0.89[EUR][1000 genomes]
rs72724462	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs910999	0.89[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1008915	chr14:65117194-65126733	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:24 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65116800-65125000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65121400-65126200	Weak transcription	Placenta Amnion	Placenta Amnion
4	chr14:65121400-65126200	Weak transcription	Rectal Mucosa Donor 29	rectum
5	chr14:65122000-65124200	Enhancers	Primary neutrophils fromperipheralblood	blood
6	chr14:65122000-65125200	Weak transcription	Primary hematopoietic stem cells	blood
7	chr14:65122000-65125600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
8	chr14:65122000-65128400	Weak transcription	HSMM	muscle
9	chr14:65122200-65125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
10	chr14:65122200-65125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
11	chr14:65122200-65125600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr14:65122200-65125800	Weak transcription	NHDF-Ad	bronchial
13	chr14:65122200-65126400	Weak transcription	Osteobl	bone
14	chr14:65122200-65128400	Weak transcription	Placenta	Placenta
15	chr14:65122200-65129600	Weak transcription	Fetal Muscle Trunk	muscle
16	chr14:65122200-65129800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
17	chr14:65122200-65129800	Weak transcription	A549	lung
18	chr14:65122600-65125800	Weak transcription	Monocytes-CD14+_RO01746	blood
19	chr14:65122600-65128400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
20	chr14:65123400-65124200	Enhancers	Liver	Liver
21	chr14:65123800-65124200	Enhancers	Fetal Muscle Leg	muscle
22	chr14:65123800-65124200	Enhancers	Skeletal Muscle Male	skeletal muscle
23	chr14:65123800-65126000	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
24	chr14:65124000-65129600	Weak transcription	Muscle Satellite Cultured Cells	--

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