Variant report

Variant	rs72724462
Chromosome Location	chr14:65138711-65138712
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

TF binding
region (count:0)
CpG islands
(count:0)
Chromatin interactive
region (count:11)
LncRNA
region (count:0)
Mature miRNA
region (count: 0)
miRNA target
sites (count:0)

No data

(count:11 , 50 per page) page: 1

No.	Distal block	Cell Line	Cell type
1	chr14:65137982..65138853-chr14:65229263..65230220,2	MCF-7	breast:
2	chr14:64973577..64975906-chr14:65136944..65139422,2	MCF-7	breast:
3	chr14:65137892..65138874-chr14:65266647..65267635,2	MCF-7	breast:
4	chr14:65138116..65138837-chr14:65266518..65267321,3	MCF-7	breast:
5	chr14:65138393..65141206-chr14:65169744..65173083,3	MCF-7	breast:
6	chr14:65138142..65139183-chr14:65231179..65232405,5	MCF-7	breast:
7	chr14:65137874..65140791-chr14:65142432..65144848,2	K562	blood:
8	chr14:65137937..65138882-chr14:65212182..65213063,6	MCF-7	breast:
9	chr14:65138592..65140467-chr14:65210995..65212825,2	MCF-7	breast:
10	chr14:65138681..65140469-chr14:65181895..65183745,2	MCF-7	breast:
11	chr14:65137759..65138752-chr14:65228203..65228779,2	MCF-7	breast:

No data

Variant related genes	Relation type
ENSG00000126822	Chromatin interaction

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11158553	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11158556	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11621301	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622587	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11622634	1.00[ASN][1000 genomes]
rs11623179	0.82[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs11623281	0.87[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs11623902	1.00[ASN][1000 genomes]
rs11625717	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11627908	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11848823	0.93[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4346134	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4406982	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4998805	0.93[AMR][1000 genomes];0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56166804	0.97[AMR][1000 genomes];0.87[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7148722	0.86[EUR][1000 genomes]
rs7152924	0.86[EUR][1000 genomes]
rs910999	0.86[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv3443734	chr14:65137049-65139247	Weak transcription Enhancers Bivalent Enhancer	Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:52 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65127600-65139800	Weak transcription	Esophagus	oesophagus
2	chr14:65130400-65139800	Weak transcription	Fetal Muscle Leg	muscle
3	chr14:65130600-65139600	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
4	chr14:65133400-65139800	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
5	chr14:65134000-65140200	Weak transcription	Duodenum Mucosa	Duodenum
6	chr14:65135400-65149200	Weak transcription	Aorta	Aorta
7	chr14:65137200-65139000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
8	chr14:65138200-65138800	Enhancers	Fetal Intestine Small	intestine
9	chr14:65138200-65138800	Enhancers	Fetal Kidney	kidney
10	chr14:65138400-65138800	Enhancers	HUES6 Cell Line	embryonic stem cell
11	chr14:65138400-65138800	Enhancers	iPS-15b Cell Line	embryonic stem cell
12	chr14:65138400-65138800	Enhancers	Primary T regulatory cells fromperipheralblood	blood
13	chr14:65138400-65138800	Enhancers	Adipose Nuclei	Adipose
14	chr14:65138400-65138800	Enhancers	Liver	Liver
15	chr14:65138400-65138800	Enhancers	Brain Angular Gyrus	brain
16	chr14:65138400-65138800	Enhancers	Brain Cingulate Gyrus	brain
17	chr14:65138400-65138800	Enhancers	Brain Hippocampus Middle	brain
18	chr14:65138400-65138800	Enhancers	Brain Substantia Nigra	brain
19	chr14:65138400-65138800	Enhancers	Fetal Intestine Large	intestine
20	chr14:65138400-65138800	Enhancers	Rectal Mucosa Donor 31	rectum
21	chr14:65138400-65138800	Enhancers	HepG2	liver
22	chr14:65138400-65139000	Enhancers	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
23	chr14:65138400-65139000	Enhancers	Primary B cells from cord blood	blood
24	chr14:65138400-65139800	Enhancers	Primary neutrophils fromperipheralblood	blood
25	chr14:65138400-65140200	Enhancers	Primary T helper 17 cells PMA-I stimulated	--
26	chr14:65138400-65140200	Bivalent Enhancer	Primary hematopoietic stem cells G-CSF-mobilized Male	--
27	chr14:65138400-65140800	Enhancers	Primary T cells effector/memory enriched fromperipheralblood	blood
28	chr14:65138400-65141000	Enhancers	Primary T helper naive cells from peripheral blood	blood
29	chr14:65138400-65141200	Enhancers	Primary T helper cells fromperipheralblood	blood
30	chr14:65138400-65141400	Enhancers	Primary T cells from cord blood	blood
31	chr14:65138400-65141400	Enhancers	Primary T helper memory cells from peripheral blood 1	blood
32	chr14:65138400-65141400	Enhancers	Primary T helper cells PMA-I stimulated	--
33	chr14:65138400-65141600	Enhancers	Primary T helper memory cells from peripheral blood 2	blood
34	chr14:65138400-65144000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr14:65138600-65138800	Enhancers	H1 Cell Line	embryonic stem cell
36	chr14:65138600-65138800	Enhancers	iPS-18 Cell Line	embryonic stem cell
37	chr14:65138600-65138800	Enhancers	Primary T killer naive cells fromperipheralblood	blood
38	chr14:65138600-65138800	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
39	chr14:65138600-65138800	Enhancers	HMEC	breast
40	chr14:65138600-65139800	Weak transcription	HUES64 Cell Line	embryonic stem cell
41	chr14:65138600-65139800	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
42	chr14:65138600-65139800	Enhancers	HSMMtube	muscle
43	chr14:65138600-65140000	Enhancers	Monocytes-CD14+_RO01746	blood
44	chr14:65138600-65140200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
45	chr14:65138600-65140200	Weak transcription	Hela-S3	cervix
46	chr14:65138600-65140400	Weak transcription	Placenta	Placenta
47	chr14:65138600-65140600	Weak transcription	Placenta Amnion	Placenta Amnion
48	chr14:65138600-65141200	Enhancers	Primary T killer memory cells from peripheral blood	blood
49	chr14:65138600-65142200	Weak transcription	Stomach Mucosa	stomach
50	chr14:65138600-65142400	Enhancers	A549	lung

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links