Variant report

Variant	rs11623902
Chromosome Location	chr14:65122390-65122391
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:65121948..65123867-chr14:65127242..65130196,2	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:14)

rs_ID	r²[population]
rs11158553	1.00[ASN][1000 genomes]
rs11158556	1.00[ASN][1000 genomes]
rs11621301	1.00[ASN][1000 genomes]
rs11622587	1.00[ASN][1000 genomes]
rs11622634	0.86[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11625717	0.87[ASN][1000 genomes]
rs11627908	0.87[ASN][1000 genomes]
rs11848823	1.00[ASN][1000 genomes]
rs4346134	1.00[ASN][1000 genomes]
rs4406982	1.00[ASN][1000 genomes]
rs4998805	1.00[ASN][1000 genomes]
rs56166804	1.00[ASN][1000 genomes]
rs72724462	1.00[ASN][1000 genomes]
rs910999	1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1049097	chr14:65027753-65202018	Weak transcription Strong transcription Enhancers Genic enhancers Transcr. at gene 5' and 3' Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Active TSS Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	21 gene(s)	inside rSNPs	diseases
2	esv1008915	chr14:65117194-65126733	ZNF genes & repeats Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:34 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:65116800-65125000	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:65117000-65128400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr14:65120400-65122600	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
4	chr14:65121200-65123600	Weak transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
5	chr14:65121400-65126200	Weak transcription	Placenta Amnion	Placenta Amnion
6	chr14:65121400-65126200	Weak transcription	Rectal Mucosa Donor 29	rectum
7	chr14:65121600-65123600	Weak transcription	NHEK	skin
8	chr14:65122000-65122600	Enhancers	Monocytes-CD14+_RO01746	blood
9	chr14:65122000-65123400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr14:65122000-65123600	Weak transcription	NHLF	lung
11	chr14:65122000-65124200	Enhancers	Primary neutrophils fromperipheralblood	blood
12	chr14:65122000-65125200	Weak transcription	Primary hematopoietic stem cells	blood
13	chr14:65122000-65125600	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
14	chr14:65122000-65128400	Weak transcription	HSMM	muscle
15	chr14:65122200-65123200	Weak transcription	Colon Smooth Muscle	Colon
16	chr14:65122200-65123400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
17	chr14:65122200-65123400	Weak transcription	Adipose Nuclei	Adipose
18	chr14:65122200-65123400	Weak transcription	Liver	Liver
19	chr14:65122200-65123400	Weak transcription	Rectal Smooth Muscle	rectum
20	chr14:65122200-65123600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr14:65122200-65123600	Weak transcription	Fetal Stomach	stomach
22	chr14:65122200-65123600	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr14:65122200-65123800	Weak transcription	Muscle Satellite Cultured Cells	--
24	chr14:65122200-65123800	Weak transcription	Fetal Muscle Leg	muscle
25	chr14:65122200-65123800	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr14:65122200-65125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
27	chr14:65122200-65125600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
28	chr14:65122200-65125600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
29	chr14:65122200-65125800	Weak transcription	NHDF-Ad	bronchial
30	chr14:65122200-65126400	Weak transcription	Osteobl	bone
31	chr14:65122200-65128400	Weak transcription	Placenta	Placenta
32	chr14:65122200-65129600	Weak transcription	Fetal Muscle Trunk	muscle
33	chr14:65122200-65129800	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
34	chr14:65122200-65129800	Weak transcription	A549	lung

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