Variant report

Variant	rs2297610
Chromosome Location	chr14:56773063-56773064
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 38 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs10152004	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs1023120	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1028973	0.91[CHB][hapmap];0.91[JPT][hapmap];0.92[ASN][1000 genomes]
rs1152464	0.92[CHB][hapmap];0.82[JPT][hapmap];0.90[ASN][1000 genomes]
rs1152466	1.00[CHB][hapmap];0.82[JPT][hapmap];0.92[ASN][1000 genomes]
rs1152471	0.92[ASN][1000 genomes]
rs1152477	0.96[ASN][1000 genomes]
rs1152478	0.90[CHB][hapmap];1.00[JPT][hapmap];0.96[ASN][1000 genomes]
rs1152479	0.82[CHB][hapmap];0.91[JPT][hapmap];0.95[ASN][1000 genomes]
rs1152486	0.84[ASN][1000 genomes]
rs1152488	0.85[ASN][1000 genomes]
rs1188691	0.85[ASN][1000 genomes]
rs12589133	1.00[AFR][1000 genomes];0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs12589933	1.00[CEU][hapmap];0.92[CHB][hapmap];0.83[AFR][1000 genomes]
rs1382974	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs17091062	1.00[CEU][hapmap]
rs17091112	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs17091123	0.84[CHB][hapmap]
rs17091196	1.00[CEU][hapmap];0.83[CHB][hapmap]
rs2228708	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs242581	0.83[CHB][hapmap]
rs3783659	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs385141	0.84[CHB][hapmap]
rs4636823	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs6573085	1.00[CEU][hapmap];0.81[JPT][hapmap]
rs7141484	1.00[CEU][hapmap];0.84[CHB][hapmap]
rs7141949	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs7143560	0.84[CHB][hapmap]
rs7161103	1.00[CEU][hapmap]
rs7161274	1.00[CEU][hapmap]
rs754314	1.00[CEU][hapmap];0.91[CHB][hapmap];0.85[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs8011852	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs8014574	0.84[CHB][hapmap]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	nsv1044886	chr14:56689682-56834648	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
3	nsv542104	chr14:56689682-56834648	Weak transcription Strong transcription Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv901978	chr14:56740554-56799997	ZNF genes & repeats Weak transcription Enhancers Strong transcription Active TSS Flanking Active TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
5	nsv901979	chr14:56740554-56802610	Weak transcription Strong transcription Enhancers Genic enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:20 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56738800-56775600	Weak transcription	Sigmoid Colon	Sigmoid Colon
2	chr14:56750400-56777600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
3	chr14:56753200-56773200	Weak transcription	Fetal Brain Male	brain
4	chr14:56757400-56773200	Weak transcription	Cortex derived primary cultured neurospheres	brain
5	chr14:56759000-56777000	Weak transcription	Left Ventricle	heart
6	chr14:56764400-56774400	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
7	chr14:56764400-56785600	Weak transcription	Lung	lung
8	chr14:56764400-56798200	Weak transcription	Pancreas	Pancrea
9	chr14:56764400-56808800	Weak transcription	Thymus	Thymus
10	chr14:56765200-56774800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
11	chr14:56765200-56776600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
12	chr14:56766400-56776800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
13	chr14:56767600-56777200	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
14	chr14:56767800-56777200	Weak transcription	NH-A	brain
15	chr14:56768600-56784600	Weak transcription	Dnd41	blood
16	chr14:56769800-56776000	Weak transcription	Primary hematopoietic stem cells	blood
17	chr14:56769800-56780200	Weak transcription	Primary B cells from cord blood	blood
18	chr14:56771600-56773600	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
19	chr14:56772400-56774200	Enhancers	Brain Germinal Matrix	brain
20	chr14:56772800-56773200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin

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