Variant report

Variant	rs3783659
Chromosome Location	chr14:56637811-56637812
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr14:56637508..56640362-chr14:56648471..56651098,2	K562	blood:
2	chr14:56636851..56638777-chr14:56670905..56672750,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:28)

rs_ID	r²[population]
rs10152004	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.92[ASN][1000 genomes]
rs1152464	0.92[CHB][hapmap];0.82[JPT][hapmap]
rs1152466	0.84[CHB][hapmap];0.82[JPT][hapmap]
rs1152478	0.81[JPT][hapmap]
rs12589933	1.00[CEU][hapmap];0.93[CHB][hapmap];0.92[JPT][hapmap]
rs1382974	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1382977	0.81[JPT][hapmap]
rs17091062	1.00[CEU][hapmap];0.92[CHB][hapmap];0.84[JPT][hapmap];1.00[YRI][hapmap];0.93[EUR][1000 genomes]
rs17091112	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17091123	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs17091196	1.00[CEU][hapmap];0.85[CHB][hapmap];0.83[JPT][hapmap]
rs2228708	1.00[CEU][hapmap];0.85[CHB][hapmap];0.92[JPT][hapmap];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2297610	1.00[CEU][hapmap];0.85[CHB][hapmap]
rs242581	0.92[JPT][hapmap]
rs385141	1.00[CHB][hapmap];0.91[JPT][hapmap]
rs3898605	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs4636823	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs6573085	1.00[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs7141484	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7141889	0.93[ASN][1000 genomes]
rs7141949	1.00[CEU][hapmap];1.00[CHB][hapmap];0.92[JPT][hapmap];0.81[ASN][1000 genomes]
rs7143560	1.00[CHB][hapmap];1.00[JPT][hapmap]
rs7152487	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7161103	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs7161274	1.00[CEU][hapmap];0.85[CHB][hapmap];1.00[JPT][hapmap]
rs754314	1.00[CEU][hapmap];0.91[JPT][hapmap]
rs8011852	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs8014574	1.00[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:60 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56615600-56639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:56616800-56640200	Weak transcription	Fetal Stomach	stomach
3	chr14:56627200-56645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
4	chr14:56632200-56638000	Enhancers	Dnd41	blood
5	chr14:56633200-56638800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
6	chr14:56633800-56640200	Weak transcription	Brain Germinal Matrix	brain
7	chr14:56633800-56645000	Weak transcription	Primary B cells from cord blood	blood
8	chr14:56634200-56638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
9	chr14:56634400-56639200	Enhancers	Fetal Thymus	thymus
10	chr14:56634400-56644200	Enhancers	Pancreas	Pancrea
11	chr14:56634600-56638600	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
12	chr14:56634600-56638800	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr14:56634800-56638400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
14	chr14:56634800-56638800	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
15	chr14:56634800-56638800	Weak transcription	Brain Substantia Nigra	brain
16	chr14:56634800-56639000	Weak transcription	Adipose Nuclei	Adipose
17	chr14:56635000-56638000	Weak transcription	Brain Hippocampus Middle	brain
18	chr14:56635000-56638400	Weak transcription	Primary hematopoietic stem cells	blood
19	chr14:56635000-56638400	Weak transcription	Gastric	stomach
20	chr14:56635000-56638800	Weak transcription	Brain Anterior Caudate	brain
21	chr14:56635000-56638800	Weak transcription	Brain Inferior Temporal Lobe	brain
22	chr14:56635000-56654600	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
23	chr14:56635200-56638800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
24	chr14:56635400-56638200	Weak transcription	Esophagus	oesophagus
25	chr14:56635600-56640400	Enhancers	Stomach Mucosa	stomach
26	chr14:56635600-56647200	Weak transcription	Ovary	ovary
27	chr14:56635800-56643800	Weak transcription	Fetal Brain Female	brain
28	chr14:56636000-56638800	Weak transcription	Spleen	Spleen
29	chr14:56636000-56639000	Weak transcription	Skeletal Muscle Male	skeletal muscle
30	chr14:56636000-56640800	Enhancers	Primary T cells from cord blood	blood
31	chr14:56636200-56638200	Weak transcription	Lung	lung
32	chr14:56636200-56638800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
33	chr14:56636400-56638200	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
34	chr14:56636400-56638800	Weak transcription	Primary T helper naive cells from peripheral blood	blood
35	chr14:56636400-56639000	Weak transcription	Breast Myoepithelial Primary Cells	Breast
36	chr14:56636800-56638000	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
37	chr14:56636800-56638200	Weak transcription	Primary T helper cells fromperipheralblood	blood
38	chr14:56636800-56638800	Weak transcription	Placenta	Placenta
39	chr14:56636800-56640000	Enhancers	Duodenum Mucosa	Duodenum
40	chr14:56637000-56638600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
41	chr14:56637000-56638800	Weak transcription	Left Ventricle	heart
42	chr14:56637000-56638800	Weak transcription	Sigmoid Colon	Sigmoid Colon
43	chr14:56637000-56639000	Weak transcription	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
44	chr14:56637000-56639000	Weak transcription	Colon Smooth Muscle	Colon
45	chr14:56637000-56639200	Weak transcription	ES-WA7 Cell Line	embryonic stem cell
46	chr14:56637000-56639200	Weak transcription	iPS-18 Cell Line	embryonic stem cell
47	chr14:56637200-56638600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
48	chr14:56637200-56638800	Weak transcription	Right Atrium	heart
49	chr14:56637200-56640200	Enhancers	Fetal Intestine Small	intestine
50	chr14:56637400-56638600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links