Variant report

Variant	rs3898605
Chromosome Location	chr14:56634496-56634497
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 29 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs10152004	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs1152464	0.85[CHB][hapmap];0.82[JPT][hapmap]
rs1152466	0.82[JPT][hapmap]
rs1152478	0.81[JPT][hapmap]
rs12589933	0.85[CHB][hapmap];0.92[JPT][hapmap]
rs1382974	0.92[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs1382977	0.81[JPT][hapmap]
rs17091062	0.85[CHB][hapmap];0.91[JPT][hapmap]
rs17091112	1.00[JPT][hapmap];0.86[ASN][1000 genomes]
rs17091123	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs17091196	0.83[JPT][hapmap]
rs2228708	0.92[JPT][hapmap];0.95[ASN][1000 genomes]
rs242581	0.92[JPT][hapmap]
rs3783659	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[ASN][1000 genomes]
rs385141	0.92[CHB][hapmap];0.91[JPT][hapmap]
rs4636823	0.92[CHB][hapmap];1.00[JPT][hapmap];0.94[ASN][1000 genomes]
rs6573085	0.89[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs7141484	0.92[CHB][hapmap];1.00[JPT][hapmap];0.93[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs7141889	0.93[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7141949	0.92[CHB][hapmap];0.92[JPT][hapmap];0.84[YRI][hapmap];0.86[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs7143560	0.92[CHB][hapmap];1.00[JPT][hapmap]
rs7152487	0.85[CHB][hapmap];1.00[JPT][hapmap]
rs7161103	0.85[CHB][hapmap];1.00[JPT][hapmap];0.83[EUR][1000 genomes]
rs7161274	1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs754314	0.91[JPT][hapmap]
rs8011852	0.92[CHB][hapmap];1.00[JPT][hapmap];0.81[EUR][1000 genomes]
rs8014574	0.92[CHB][hapmap];0.91[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv533129	chr14:56568535-56819234	Enhancers Weak transcription Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	5 gene(s)	inside rSNPs	diseases
2	esv1844788	chr14:56594420-56771207	Weak transcription Enhancers Strong transcription ZNF genes & repeats Flanking Active TSS Genic enhancers Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr14:56615600-56639800	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
2	chr14:56616800-56640200	Weak transcription	Fetal Stomach	stomach
3	chr14:56621400-56637600	Weak transcription	Small Intestine	intestine
4	chr14:56627200-56645000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
5	chr14:56632200-56638000	Enhancers	Dnd41	blood
6	chr14:56633200-56638800	Weak transcription	iPS-15b Cell Line	embryonic stem cell
7	chr14:56633400-56634600	Weak transcription	Primary T cells from cord blood	blood
8	chr14:56633800-56640200	Weak transcription	Brain Germinal Matrix	brain
9	chr14:56633800-56645000	Weak transcription	Primary B cells from cord blood	blood
10	chr14:56634000-56634800	Enhancers	Adipose Nuclei	Adipose
11	chr14:56634200-56638800	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
12	chr14:56634400-56634800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr14:56634400-56634800	Enhancers	Brain Substantia Nigra	brain
14	chr14:56634400-56635200	Enhancers	Stomach Mucosa	stomach
15	chr14:56634400-56636400	Genic enhancers	Thymus	Thymus
16	chr14:56634400-56639200	Enhancers	Fetal Thymus	thymus
17	chr14:56634400-56644200	Enhancers	Pancreas	Pancrea

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