The 2.0 version of rSNPBase

Variant report

Variant rs2298205
Chromosome Location chr1:180135286-180135287
allele A/G
Outlinks Ensembl   UCSC
Chromatin state (count:110 , 50 per page) page: 1 2 3
No. Chromosome Location Chromatin state Cell line Tissue
1 chr1:180124800-180151000 Weak transcription Aorta Aorta
2 chr1:180125000-180136000 Weak transcription Ganglion Eminence derived primary cultured neurospheres brain
3 chr1:180125200-180137400 Weak transcription Foreskin Melanocyte Primary Cells skin03 Skin
4 chr1:180125200-180150400 Weak transcription Primary T helper 17 cells PMA-I stimulated --
5 chr1:180125600-180136400 Weak transcription H9 Derived Neuron Cultured Cells ES cell derived
6 chr1:180125600-180159200 Weak transcription Primary T killer memory cells from peripheral blood blood
7 chr1:180125800-180135800 Weak transcription Primary T cells from cord blood blood
8 chr1:180126000-180135600 Weak transcription Primary mononuclear cells fromperipheralblood Blood
9 chr1:180126000-180136800 Weak transcription Primary T helper cells PMA-I stimulated --
10 chr1:180126000-180151000 Weak transcription Primary B cells from peripheral blood blood
11 chr1:180126000-180151400 Weak transcription Primary T helper naive cells fromperipheralblood blood
12 chr1:180126200-180136600 Weak transcription Colon Smooth Muscle Colon
13 chr1:180126200-180152400 Weak transcription Primary T regulatory cells fromperipheralblood blood
14 chr1:180126400-180153800 Weak transcription Primary T helper cells fromperipheralblood blood
15 chr1:180126600-180135600 Weak transcription Primary T cells fromperipheralblood blood
16 chr1:180126600-180135600 Weak transcription Primary Natural Killer cells fromperipheralblood blood
17 chr1:180126800-180135800 Weak transcription Hela-S3 cervix
18 chr1:180127200-180136000 Weak transcription Mesenchymal Stem Cell Derived Adipocyte Cultured Cells ES cell derived
19 chr1:180127200-180137400 Weak transcription hESC Derived CD56+ Mesoderm Cultured Cells ES cell derived
20 chr1:180127200-180140400 Weak transcription GM12878-XiMat blood
21 chr1:180127400-180142800 Weak transcription HSMM muscle
22 chr1:180127600-180137400 Weak transcription K562 blood
23 chr1:180127600-180142600 Weak transcription Rectal Smooth Muscle rectum
24 chr1:180127800-180135400 Weak transcription NHDF-Ad bronchial
25 chr1:180127800-180136200 Weak transcription Duodenum Smooth Muscle Duodenum
26 chr1:180127800-180136600 Weak transcription HUVEC blood vessel
27 chr1:180127800-180136800 Weak transcription Muscle Satellite Cultured Cells --
28 chr1:180127800-180137200 Weak transcription Adipose Derived Mesenchymal Stem Cell Cultured Cells ES cell derived
29 chr1:180128600-180135400 Weak transcription Duodenum Mucosa Duodenum
30 chr1:180128600-180135800 Weak transcription Rectal Mucosa Donor 29 rectum
31 chr1:180128600-180137000 Weak transcription Fetal Intestine Large intestine
32 chr1:180129000-180135600 Weak transcription Rectal Mucosa Donor 31 rectum
33 chr1:180130000-180135400 Weak transcription Bone Marrow Derived Cultured Mesenchymal Stem Cells Bone marrow
34 chr1:180130000-180135400 Weak transcription NHEK skin
35 chr1:180130000-180135600 Weak transcription H9 Cell Line embryonic stem cell
36 chr1:180130000-180135800 Weak transcription Osteobl bone
37 chr1:180130000-180136400 Weak transcription ES-I3 Cell Line embryonic stem cell
38 chr1:180130000-180137000 Weak transcription Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells embryonic stem cell
39 chr1:180130600-180135600 Weak transcription iPS-15b Cell Line embryonic stem cell
40 chr1:180130600-180135600 Weak transcription ES-UCSF4 Cell Line embryonic stem cell
41 chr1:180130600-180135800 Weak transcription iPS-20b Cell Line embryonic stem cell
42 chr1:180130600-180136000 Weak transcription iPS-18 Cell Line embryonic stem cell
43 chr1:180131800-180135800 Weak transcription Small Intestine intestine
44 chr1:180132800-180135400 Strong transcription Foreskin Keratinocyte Primary Cells skin03 Skin
45 chr1:180132800-180140600 Enhancers Stomach Mucosa stomach
46 chr1:180133000-180135400 Strong transcription NHLF lung
47 chr1:180133000-180137200 Enhancers Right Ventricle heart
48 chr1:180133000-180138000 Enhancers Pancreas Pancrea
49 chr1:180133000-180138200 Genic enhancers Foreskin Fibroblast Primary Cells skin02 Skin
50 chr1:180133000-180139400 Enhancers Left Ventricle heart

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Last update: Aug 31, 2015