Variant report

Variant	rs2298478
Chromosome Location	chr11:120984087-120984088
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2282565	0.89[YRI][hapmap]
rs3758893	0.87[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs642548	0.89[YRI][hapmap]
rs7108166	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:18 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120975800-121005600	Weak transcription	Right Ventricle	heart
2	chr11:120976400-120984200	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr11:120976600-120992200	Weak transcription	Stomach Smooth Muscle	stomach
4	chr11:120976600-120998400	Weak transcription	Brain Anterior Caudate	brain
5	chr11:120980000-120991000	Weak transcription	Aorta	Aorta
6	chr11:120980600-120998400	Weak transcription	Fetal Brain Female	brain
7	chr11:120981400-120992400	Weak transcription	Brain Germinal Matrix	brain
8	chr11:120982200-120984200	Weak transcription	H9 Derived Neuron Cultured Cells	ES cell derived
9	chr11:120983400-120984600	Weak transcription	Fetal Stomach	stomach
10	chr11:120983400-120991000	Weak transcription	Fetal Muscle Leg	muscle
11	chr11:120983400-120993400	Weak transcription	Brain Substantia Nigra	brain
12	chr11:120983600-120984400	Enhancers	Skeletal Muscle Male	skeletal muscle
13	chr11:120983600-120984800	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
14	chr11:120983600-120987600	Weak transcription	Fetal Lung	lung
15	chr11:120983800-120984600	Weak transcription	HSMMtube	muscle
16	chr11:120983800-120991000	Weak transcription	Fetal Muscle Trunk	muscle
17	chr11:120983800-120992800	Weak transcription	Breast Myoepithelial Primary Cells	Breast
18	chr11:120983800-120993200	Weak transcription	Fetal Brain Male	brain

Quick Search:

Input of quick search could be:

dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

what's new

Quick links