Variant report

Variant	rs3758893
Chromosome Location	chr11:120975390-120975391
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:120975216..120977193-chr11:121456635..121459591,2	K562	blood:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:4)

rs_ID	r²[population]
rs2282565	0.89[YRI][hapmap]
rs2298478	0.87[ASW][hapmap];0.92[LWK][hapmap];1.00[YRI][hapmap];0.88[AFR][1000 genomes]
rs642548	0.89[YRI][hapmap]
rs7108166	0.89[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv524	chr11:120963503-121008167	Weak transcription ZNF genes & repeats Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region	1 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:26 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:120942800-120979000	Weak transcription	Aorta	Aorta
2	chr11:120958800-120980600	Weak transcription	Brain Germinal Matrix	brain
3	chr11:120959600-120975800	Weak transcription	Brain Hippocampus Middle	brain
4	chr11:120962600-120976000	Weak transcription	HSMMtube	muscle
5	chr11:120971800-120983600	Weak transcription	H9 Cell Line	embryonic stem cell
6	chr11:120972600-120975600	Weak transcription	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
7	chr11:120974600-120976800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
8	chr11:120974600-120978200	Enhancers	Breast Myoepithelial Primary Cells	Breast
9	chr11:120975000-120975400	Enhancers	Spleen	Spleen
10	chr11:120975000-120975800	Enhancers	Right Ventricle	heart
11	chr11:120975000-120976000	Enhancers	Fetal Muscle Trunk	muscle
12	chr11:120975000-120976400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr11:120975000-120976600	Enhancers	Left Ventricle	heart
14	chr11:120975000-120976600	Enhancers	Right Atrium	heart
15	chr11:120975000-120977200	Enhancers	Fetal Lung	lung
16	chr11:120975000-120977200	Enhancers	Fetal Stomach	stomach
17	chr11:120975000-120977200	Enhancers	Ovary	ovary
18	chr11:120975200-120975400	Enhancers	iPS-18 Cell Line	embryonic stem cell
19	chr11:120975200-120975400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
20	chr11:120975200-120975400	Enhancers	Esophagus	oesophagus
21	chr11:120975200-120975800	Enhancers	H1 Cell Line	embryonic stem cell
22	chr11:120975200-120976400	Weak transcription	Stomach Smooth Muscle	stomach
23	chr11:120975200-120976600	Enhancers	Adipose Nuclei	Adipose
24	chr11:120975200-120976600	Enhancers	Lung	lung
25	chr11:120975200-120976800	Enhancers	Psoas Muscle	Psoas
26	chr11:120975200-120977600	Enhancers	Fetal Muscle Leg	muscle

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links