Variant report

Variant	rs2298621
Chromosome Location	chr9:24146465-24146466
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	lncRNA name	Chromosome Location	lncRNA alias
1	lnc-DMRTA1-6	chr9:24146434-24146893	XLOC_007303
2	lnc-DMRTA1-6	chr9:24146433-24146893	NONHSAT130486

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:6)

rs_ID	r²[population]
rs10812030	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10966244	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2210562	0.83[EUR][1000 genomes]
rs2298619	1.00[ASN][1000 genomes]
rs2298620	0.89[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7854397	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.99[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:24 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3378420	chr9:24010617-24371943	Weak transcription Enhancers Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
2	nsv831527	chr9:24036609-24204882	Enhancers ZNF genes & repeats Weak transcription Bivalent Enhancer	Chromatin interactive region lncRNA	n/a	inside rSNPs	diseases
3	nsv1030724	chr9:24096911-24334841	Enhancers Weak transcription Bivalent Enhancer Active TSS Flanking Active TSS ZNF genes & repeats Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
4	nsv540095	chr9:24096911-24334841	Enhancers Weak transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Active TSS	lncRNA	n/a	inside rSNPs	diseases
5	nsv1033331	chr9:24111020-24349562	Weak transcription Enhancers ZNF genes & repeats Active TSS Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
6	nsv540096	chr9:24111020-24349562	Enhancers Weak transcription Active TSS Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats Bivalent Enhancer	lncRNA	n/a	inside rSNPs	diseases
7	nsv1022552	chr9:24111220-24349423	Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Active TSS ZNF genes & repeats	lncRNA	n/a	inside rSNPs	diseases
8	nsv540097	chr9:24111220-24349423	Enhancers Flanking Active TSS Weak transcription ZNF genes & repeats Active TSS Bivalent Enhancer Bivalent/Poised TSS	lncRNA	n/a	inside rSNPs	diseases
9	nsv972656	chr9:24124133-24159462	Enhancers	lncRNA	n/a	inside rSNPs	diseases
10	nsv613831	chr9:24125018-24154728	Enhancers	lncRNA	n/a	inside rSNPs	diseases
11	esv2752290	chr9:24131800-24544900	Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Active TSS Bivalent/Poised TSS Bivalent Enhancer	TF binding region lncRNA	1 gene(s)	inside rSNPs	diseases
12	nsv613832	chr9:24140413-24150204	Enhancers	lncRNA	n/a	inside rSNPs	diseases
13	esv3483002	chr9:24145359-24150508	Enhancers	lncRNA	n/a	inside rSNPs	diseases
14	esv3483001	chr9:24145465-24150392	Enhancers	lncRNA	n/a	inside rSNPs	diseases
15	esv3483003	chr9:24145479-24150392	Enhancers	lncRNA	n/a	inside rSNPs	diseases
16	esv17094	chr9:24145509-24150358	Enhancers	lncRNA	n/a	inside rSNPs	diseases
17	nsv613833	chr9:24146203-24148042	Enhancers	lncRNA	n/a	inside rSNPs	diseases
18	nsv613834	chr9:24146203-24148399	Enhancers	lncRNA	n/a	inside rSNPs	diseases
19	nsv613835	chr9:24146203-24148460	Enhancers	lncRNA	n/a	inside rSNPs	diseases
20	nsv613836	chr9:24146203-24148772	Enhancers	lncRNA	n/a	inside rSNPs	diseases
21	nsv613837	chr9:24146203-24150204	Enhancers	lncRNA	n/a	inside rSNPs	diseases
22	nsv523633	chr9:24146203-24152518	Enhancers	lncRNA	n/a	inside rSNPs	diseases
23	nsv613838	chr9:24146203-24152518	Enhancers	lncRNA	n/a	inside rSNPs	diseases
24	nsv613839	chr9:24146436-24150204	Enhancers	lncRNA	n/a	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr9:24146000-24147200	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
2	chr9:24146200-24146800	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
3	chr9:24146400-24146800	Enhancers	H9 Cell Line	embryonic stem cell
4	chr9:24146400-24146800	Enhancers	iPS-18 Cell Line	embryonic stem cell

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