Variant report

Variant	rs2298903
Chromosome Location	chr1:169567516-169567517
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 70 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:68)

rs_ID	r²[population]
rs10919192	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs10919193	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs11587922	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12402407	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12402701	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12403625	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs12406092	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs12567645	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs17521545	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1894700	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs1894702	0.87[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2040442	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2187954	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs2213870	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2213871	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2213872	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2213873	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2223303	0.85[AFR][1000 genomes]
rs2227245	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2236869	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2236870	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2236871	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs2239854	0.81[AMR][1000 genomes];0.80[EUR][1000 genomes]
rs2298905	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2298907	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs2420378	0.88[AFR][1000 genomes]
rs34580812	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs35852972	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3766119	0.94[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3766120	0.93[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3766121	0.94[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3766126	0.85[AFR][1000 genomes]
rs3820061	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs3917750	0.82[AFR][1000 genomes]
rs3917777	0.90[AFR][1000 genomes]
rs3917854	0.81[CEU][hapmap];0.94[CHB][hapmap];0.95[AMR][1000 genomes];0.85[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs4268401	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs4656692	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656693	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656694	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4656695	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6028	0.96[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs61805771	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs61805772	0.87[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs6662176	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6666046	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs6691048	0.86[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs6693839	0.92[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs724508	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs742127	0.91[CEU][hapmap];1.00[CHB][hapmap];0.90[JPT][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.98[AMR][1000 genomes];0.93[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs7542088	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7542281	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7542345	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7544132	0.90[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs7553699	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs7554566	0.84[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9332510	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332511	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332513	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332516	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332531	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332533	0.85[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs9332538	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332542	0.87[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332546	0.85[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332553	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332554	0.94[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9332556	0.92[AMR][1000 genomes];0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv10418	chr1:169059628-169621268	Enhancers Weak transcription Flanking Active TSS Active TSS Genic enhancers Strong transcription ZNF genes & repeats Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	56 gene(s)	inside rSNPs	diseases
2	nsv872538	chr1:169567516-169576207	Enhancers Flanking Active TSS Weak transcription Active TSS Bivalent Enhancer	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:6 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr1:169558800-169570000	Weak transcription	Primary T cells from cord blood	blood
2	chr1:169559200-169570400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr1:169564000-169570200	Weak transcription	Primary T regulatory cells fromperipheralblood	blood
4	chr1:169564400-169569800	Weak transcription	Primary T helper cells PMA-I stimulated	--
5	chr1:169565200-169570400	Weak transcription	GM12878-XiMat	blood
6	chr1:169565400-169581400	Weak transcription	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived

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