Variant report

Variant	rs2299398
Chromosome Location	chr7:103529697-103529698
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs10270041	0.89[ASN][1000 genomes]
rs10276523	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11489607	0.84[ASN][1000 genomes]
rs13236155	0.84[ASN][1000 genomes]
rs17269079	0.89[ASN][1000 genomes]
rs2299397	0.85[ASN][1000 genomes]
rs2299400	0.94[ASN][1000 genomes]
rs28481950	0.89[ASN][1000 genomes]
rs34566446	0.88[ASN][1000 genomes]
rs3857816	0.89[ASN][1000 genomes]
rs3915119	0.80[ASN][1000 genomes]
rs3933462	0.81[ASN][1000 genomes]
rs4729936	0.87[ASN][1000 genomes]
rs6948463	0.82[ASN][1000 genomes]
rs6948468	0.92[ASN][1000 genomes]
rs6980344	1.00[AFR][1000 genomes];0.95[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7779050	0.89[ASN][1000 genomes]
rs7796126	0.89[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103526800-103531000	Enhancers	K562	blood
2	chr7:103528200-103530400	Enhancers	Fetal Heart	heart
3	chr7:103529200-103529800	Enhancers	Pancreas	Pancrea
4	chr7:103529200-103531200	Enhancers	HepG2	liver

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dbSNP/dbVar ID: rs12345 /nsv7879
a single nucleotide as 0-based coordinates: chr1:12345
chromosomal regions: chr1:12345-34567

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