Variant report

Variant	rs2299400
Chromosome Location	chr7:103529958-103529959
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr7:103528310..103530000-chr7:103532562..103534288,2	K562	blood:
2	chr7:103527274..103529978-chr7:103557277..103559784,3	K562	blood:

Extended variants
information (count: 39 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:38)

rs_ID	r²[population]
rs10254112	0.87[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs10270041	0.85[ASN][1000 genomes]
rs10276523	0.94[ASN][1000 genomes]
rs11489607	0.90[ASN][1000 genomes]
rs11761756	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs12705166	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs13236155	0.90[ASN][1000 genomes]
rs1524802	0.91[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs1541540	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs17269079	0.85[ASN][1000 genomes]
rs2299397	0.89[ASN][1000 genomes]
rs2299398	0.94[ASN][1000 genomes]
rs28481950	0.85[ASN][1000 genomes]
rs34566446	0.84[ASN][1000 genomes]
rs3857814	0.97[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3857815	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3857816	0.85[ASN][1000 genomes]
rs3914123	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs3914131	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3914132	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3914133	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs3915118	0.82[AMR][1000 genomes]
rs3915119	0.86[ASN][1000 genomes]
rs3933462	0.85[ASN][1000 genomes]
rs4107712	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4727577	0.90[AFR][1000 genomes];0.83[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs4727578	1.00[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs4729936	0.83[ASN][1000 genomes]
rs6465940	0.93[AFR][1000 genomes];0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6465943	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6465944	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs6948463	0.88[ASN][1000 genomes]
rs6948468	0.99[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6958221	0.94[AFR][1000 genomes];0.91[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7357331	0.83[AFR][1000 genomes];0.89[AMR][1000 genomes];0.99[EUR][1000 genomes]
rs7779050	0.85[ASN][1000 genomes]
rs7795445	0.82[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs7796126	0.85[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv1843940	chr7:103421702-103590285	Weak transcription Enhancers Strong transcription Flanking Active TSS Genic enhancers Active TSS ZNF genes & repeats	Chromatin interactive region	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:4 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr7:103526800-103531000	Enhancers	K562	blood
2	chr7:103528200-103530400	Enhancers	Fetal Heart	heart
3	chr7:103529200-103531200	Enhancers	HepG2	liver
4	chr7:103529800-103530400	Weak transcription	Pancreas	Pancrea

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