Variant report

Variant	rs2301749
Chromosome Location	chr6:31371355-31371356
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	POLR2A	chr6:31370965-31371553	H1-hESC	embryonic stem cell:	n/a	n/a
2	ZKSCAN1	chr6:31371146-31371583	Hela-S3	cervix:	n/a	n/a
3	POLR2A	chr6:31370662-31371677	PANC-1	pancreas:	n/a	n/a
4	SIN3AK20	chr6:31371223-31371670	SK-N-SH	brain:	n/a	n/a
5	MYC	chr6:31370975-31371566	K562	blood:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
6	MAX	chr6:31370953-31371764	SK-N-SH	brain:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
7	TCF12	chr6:31370876-31371778	ECC-1	luminal epithelium:	n/a	chr6:31371639-31371649
8	ZBTB7A	chr6:31370877-31371754	ECC-1	luminal epithelium:	n/a	chr6:31371063-31371074 chr6:31371062-31371073 chr6:31371049-31371058
9	YY1	chr6:31371157-31371740	K562	blood:	n/a	chr6:31371257-31371271
10	USF1	chr6:31371135-31371525	A549	lung:	n/a	n/a
11	YY1	chr6:31371254-31371687	K562	blood:	n/a	chr6:31371257-31371271
12	ZBTB7A	chr6:31370907-31371794	ECC-1	luminal epithelium:	n/a	chr6:31371063-31371074 chr6:31371062-31371073 chr6:31371049-31371058
13	SP1	chr6:31370968-31371660	A549	lung:	n/a	chr6:31371258-31371268 chr6:31371266-31371287 chr6:31371258-31371267 chr6:31371258-31371272 chr6:31371257-31371268 chr6:31371197-31371208 chr6:31371259-31371268 chr6:31371016-31371023 chr6:31371257-31371269 chr6:31371569-31371578 chr6:31371257-31371269
14	TAF1	chr6:31371201-31371578	SK-N-SH	brain:	n/a	n/a
15	NFYB	chr6:31371085-31371492	Hela-S3	cervix:	n/a	chr6:31371304-31371319 chr6:31371275-31371290
16	GTF2F1	chr6:31371288-31371431	K562	blood:	n/a	n/a
17	MAZ	chr6:31371028-31371737	K562	blood:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
18	POLR2A	chr6:31370225-31371676	PANC-1	pancreas:	n/a	n/a
19	E2F6	chr6:31370726-31371799	H1-hESC	embryonic stem cell:	n/a	chr6:31371277-31371286 chr6:31371505-31371514 chr6:31371050-31371059
20	POLR2A	chr6:31371014-31371556	GM18951	blood:	n/a	n/a
21	USF1	chr6:31371128-31371492	SK-N-SH_RA	brain:	n/a	n/a
22	RFX5	chr6:31371235-31371435	HepG2	liver:	n/a	chr6:31371361-31371376
23	GABPA	chr6:31370981-31371878	MCF-7	breast:	n/a	chr6:31371050-31371059 chr6:31371052-31371061
24	TCF12	chr6:31371250-31371539	GM12878	blood:	n/a	n/a
25	ELF1	chr6:31371014-31372018	GM12878	blood:	n/a	chr6:31371364-31371376
26	POLR2A	chr6:31370821-31372025	K562	blood:	n/a	n/a
27	TAF1	chr6:31370887-31371726	ECC-1	luminal epithelium:	n/a	n/a
28	NFYA	chr6:31371014-31371662	K562	blood:	n/a	n/a
29	USF1	chr6:31371152-31371425	HepG2	liver:	n/a	n/a
30	NFYA	chr6:31371045-31371493	Hela-S3	cervix:	n/a	n/a
31	MAX	chr6:31371023-31371562	K562	blood:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
32	TAF1	chr6:31370716-31371588	H1-hESC	embryonic stem cell:	n/a	n/a
33	UBTF	chr6:31371254-31371646	K562	blood:	n/a	n/a
34	CREB1	chr6:31371223-31371783	H1-hESC	embryonic stem cell:	n/a	n/a
35	POLR2A	chr6:31370777-31371795	HepG2	liver:	n/a	n/a
36	REST	chr6:31371270-31371507	SK-N-SH	brain:	n/a	n/a
37	POLR2A	chr6:31371108-31371549	PFSK-1	brain:	n/a	n/a
38	TEAD4	chr6:31371007-31371472	H1-hESC	embryonic stem cell:	n/a	n/a
39	TAF1	chr6:31371114-31371726	A549	lung:	n/a	n/a
40	USF2	chr6:31371151-31371619	H1-hESC	embryonic stem cell:	n/a	n/a
41	POLR2A	chr6:31370858-31371728	MCF-7	breast:	n/a	n/a
42	TAF1	chr6:31370866-31371717	ECC-1	luminal epithelium:	n/a	n/a
43	MAX	chr6:31370732-31371883	HepG2	liver:	n/a	chr6:31371332-31371343 chr6:31371258-31371268
44	POLR2A	chr6:31370952-31371589	HepG2	liver:	n/a	n/a
45	ELF1	chr6:31371109-31371564	HepG2	liver:	n/a	chr6:31371364-31371376
46	POLR2A	chr6:31371034-31371643	K562	blood:	n/a	n/a
47	RCOR1	chr6:31371044-31371734	Hela-S3	cervix:	n/a	n/a
48	ETS1	chr6:31371265-31371641	K562	blood:	n/a	n/a
49	HEY1	chr6:31370735-31371658	HepG2	liver:	n/a	chr6:31371160-31371175
50	MAX	chr6:31370706-31371920	A549	lung:	n/a	chr6:31371332-31371343 chr6:31371258-31371268

No.	Chromosome Location	Cell Line	Cell type	Cell Stage
1	chr6:31371351-31371401	NHBE	bronchial:	n/a
2	chr6:31371353-31371403	HPAEpiC	pulmonary alveolar:	n/a
3	chr6:31371351-31371401	HMEC	breast:	n/a
4	chr6:31371351-31371401	NT2-D1	testis:	n/a
5	chr6:31371330-31371380	HepG2	liver:	n/a
6	chr6:31371351-31371401	GM12878	blood:	n/a
7	chr6:31371322-31371372	HRPEpiC	eye:	n/a
8	chr6:31371322-31371372	ovcar-3	ovarian:	n/a
9	chr6:31371330-31371380	GM06990	blood:	n/a
10	chr6:31371351-31371401	HL-60	blood:	n/a
11	chr6:31371318-31371368	NHDF-neo	bronchial:	n/a
12	chr6:31371330-31371380	NT2-D1	testis:	n/a
13	chr6:31371330-31371380	RPTEC	kidney:	n/a
14	chr6:31371351-31371401	T-47D	breast:	n/a
15	chr6:31371322-31371372	PrEC	prostate:	n/a
16	chr6:31371353-31371403	HRCEpiC	kidney:	n/a
17	chr6:31371322-31371372	HMEC	breast:	n/a
18	chr6:31371322-31371372	HEK293	kidney:	embryo
19	chr6:31371318-31371368	SKMC	muscle:	n/a
20	chr6:31371322-31371372	HCPEpiC	choroid plexus:	n/a
21	chr6:31371351-31371401	U87	brain:	n/a
22	chr6:31371322-31371372	IMR90	lung:	fetal
23	chr6:31371330-31371380	NHBE	bronchial:	n/a
24	chr6:31371318-31371368	HNPCEpiC	eye:	n/a
25	chr6:31371322-31371372	HRCEpiC	kidney:	n/a
26	chr6:31371330-31371380	IMR90	lung:	fetal
27	chr6:31371351-31371401	HNPCEpiC	eye:	n/a
28	chr6:31371351-31371401	AG09309	skin:	n/a
29	chr6:31371318-31371368	ECC-1	luminal epithelium:	n/a
30	chr6:31371318-31371368	AG09309	skin:	n/a
31	chr6:31371351-31371401	HCF	heart:	n/a
32	chr6:31371353-31371403	HAEpiC	amniotic membrane:	n/a
33	chr6:31371351-31371401	RPTEC	kidney:	n/a
34	chr6:31371322-31371372	PFSK-1	brain:	n/a
35	chr6:31371322-31371372	HNPCEpiC	eye:	n/a
36	chr6:31371330-31371380	SK-N-MC	brain:	n/a
37	chr6:31371351-31371401	HCM	heart:	n/a
38	chr6:31371353-31371403	K562	blood:	n/a
39	chr6:31371318-31371368	HEK293	kidney:	embryo
40	chr6:31371318-31371368	GM19239	blood:	n/a
41	chr6:31371353-31371403	GM12892	blood:	n/a
42	chr6:31371353-31371403	SK-N-SH	brain:	n/a
43	chr6:31371322-31371372	ECC-1	luminal epithelium:	n/a
44	chr6:31371330-31371380	PANC-1	pancreas:	n/a
45	chr6:31371351-31371401	MCF10A-Er-Src	breast:	n/a
46	chr6:31371353-31371403	AG04449	skin:	fetal
47	chr6:31371318-31371368	ProgFib	skin:	n/a
48	chr6:31371330-31371380	PrEC	prostate:	n/a
49	chr6:31371330-31371380	LNCaP	prostate:	n/a
50	chr6:31371351-31371401	PANC-1	pancreas:	n/a

No.	Distal block	Cell Line	Cell type
1	chr6:31371228..31373084-chr6:31465857..31468794,2	K562	blood:
2	chr15:65596786..65597625-chr6:31371107..31371804,2	Hela-S3	cervix:
3	chr6:31137284..31139502-chr6:31369827..31372777,2	K562	blood:
4	chr6:31367433..31369345-chr6:31370082..31372191,3	MCF-7	breast:
5	chr6:31369734..31371569-chr6:31409122..31410945,2	MCF-7	breast:
6	chr6:31366610..31369320-chr6:31369483..31372950,5	MCF-7	breast:
7	chr17:41465639..41466316-chr6:31370631..31371428,2	Hela-S3	cervix:

Variant related genes	Relation type
ENSG00000199332	TF binding region
MICA	TF binding region
ENSG00000199332	CpG island
MICA	CpG island
ENSG00000204516	Chromatin interaction
ENSG00000206337	Chromatin interaction
ENSG00000200156	Chromatin interaction
ENSG00000188825	Chromatin interaction
ENSG00000230174	Chromatin interaction
ENSG00000204531	Chromatin interaction

Extended variants
information (count: 294 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:9)

rs_ID	r²[population]
rs13217049	0.86[ASN][1000 genomes]
rs13220896	0.86[ASN][1000 genomes]
rs34346286	0.86[ASN][1000 genomes]
rs34812177	0.83[ASN][1000 genomes]
rs35309880	0.86[ASN][1000 genomes]
rs71563313	0.89[EUR][1000 genomes]
rs71563327	0.83[ASN][1000 genomes]
rs71563336	1.00[ASN][1000 genomes]
rs71563338	0.86[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:285 , 50 per page) page: 1 2 3 4 5 6

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
10	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
12	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
13	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
14	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
15	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
16	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
17	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
18	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
19	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
20	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
21	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
23	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
24	nsv1029508	chr6:31269776-31445712	Enhancers Bivalent Enhancer Weak transcription Flanking Active TSS Active TSS Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
25	nsv538182	chr6:31269776-31445712	Bivalent Enhancer Enhancers Flanking Active TSS Strong transcription Weak transcription Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
26	esv1830805	chr6:31269777-31450100	Flanking Active TSS Bivalent/Poised TSS Enhancers Transcr. at gene 5' and 3' Active TSS Weak transcription Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	41 gene(s)	inside rSNPs	diseases
27	esv33563	chr6:31275505-31453668	Weak transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
28	nsv601570	chr6:31276751-31451476	Enhancers Flanking Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Weak transcription Transcr. at gene 5' and 3' Strong transcription Active TSS Bivalent/Poised TSS Genic enhancers Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
29	nsv538184	chr6:31277798-31445712	Flanking Bivalent TSS/Enh Genic enhancers Active TSS Transcr. at gene 5' and 3' Weak transcription Enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
30	nsv1029678	chr6:31279535-31449207	Weak transcription Active TSS Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription Flanking Active TSS Bivalent Enhancer Bivalent/Poised TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
31	nsv538185	chr6:31279535-31449207	Active TSS Flanking Active TSS Weak transcription Genic enhancers Enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
32	nsv1022451	chr6:31279535-31485736	Flanking Active TSS Enhancers Bivalent Enhancer Active TSS Weak transcription Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA	56 gene(s)	inside rSNPs	diseases
33	nsv601608	chr6:31280101-31389784	Flanking Active TSS Bivalent/Poised TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Strong transcription Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
34	nsv601609	chr6:31280101-31799786	Active TSS Flanking Active TSS Bivalent/Poised TSS Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Enhancers Genic enhancers Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	332 gene(s)	inside rSNPs	diseases
35	nsv601610	chr6:31280101-31960770	Enhancers Flanking Active TSS Weak transcription Genic enhancers Strong transcription Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	370 gene(s)	inside rSNPs	diseases
36	nsv601628	chr6:31280327-31990098	Weak transcription Transcr. at gene 5' and 3' Active TSS Enhancers Flanking Active TSS Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
37	nsv601629	chr6:31280327-31996185	Strong transcription Enhancers Weak transcription Flanking Active TSS Transcr. at gene 5' and 3' Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	376 gene(s)	inside rSNPs	diseases
38	nsv601630	chr6:31280327-32011317	Genic enhancers Active TSS Weak transcription Enhancers Strong transcription Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
39	nsv601631	chr6:31280327-32017540	Genic enhancers Enhancers Weak transcription Active TSS Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	378 gene(s)	inside rSNPs	diseases
40	nsv601660	chr6:31281770-31451476	Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
41	nsv538186	chr6:31282952-31445712	Active TSS Transcr. at gene 5' and 3' Strong transcription Enhancers Flanking Active TSS Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	39 gene(s)	inside rSNPs	diseases
42	nsv869722	chr6:31287397-31461074	Flanking Active TSS Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Strong transcription Active TSS Enhancers Bivalent Enhancer Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	46 gene(s)	inside rSNPs	diseases
43	nsv884319	chr6:31308988-31430721	Weak transcription Flanking Active TSS Strong transcription Active TSS Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	37 gene(s)	inside rSNPs	diseases
44	esv3491002	chr6:31310527-31398831	Active TSS Flanking Active TSS Enhancers Bivalent/Poised TSS Weak transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
45	esv3491003	chr6:31310527-31398831	Flanking Active TSS Weak transcription Bivalent/Poised TSS Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	36 gene(s)	inside rSNPs	diseases
46	esv1828258	chr6:31316612-31456605	Weak transcription Active TSS Bivalent Enhancer Enhancers Flanking Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	40 gene(s)	inside rSNPs	diseases
47	nsv538187	chr6:31325961-31445712	Active TSS Flanking Active TSS Weak transcription Enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	33 gene(s)	inside rSNPs	diseases
48	nsv1023939	chr6:31325961-32026747	Active TSS Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Enhancers Weak transcription ZNF genes & repeats Strong transcription Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
49	nsv538188	chr6:31325961-32026747	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers ZNF genes & repeats Bivalent Enhancer Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	372 gene(s)	inside rSNPs	diseases
50	nsv517441	chr6:31336100-31463963	Active TSS Weak transcription Enhancers Flanking Active TSS Bivalent Enhancer Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	43 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31367400-31372000	Active TSS	Aorta	Aorta
2	chr6:31367800-31372600	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
3	chr6:31368600-31372400	Flanking Active TSS	Primary hematopoietic stem cells short term culture	blood
4	chr6:31368800-31372000	Flanking Active TSS	Dnd41	blood
5	chr6:31368800-31372400	Flanking Active TSS	Adipose Nuclei	Adipose
6	chr6:31368800-31372400	Flanking Active TSS	Monocytes-CD14+_RO01746	blood
7	chr6:31369600-31372400	Flanking Active TSS	Rectal Mucosa Donor 29	rectum
8	chr6:31369800-31372200	Flanking Active TSS	Primary T helper cells fromperipheralblood	blood
9	chr6:31369800-31372400	Flanking Active TSS	Primary hematopoietic stem cells	blood
10	chr6:31369800-31372400	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
11	chr6:31370000-31372000	Flanking Active TSS	Primary B cells from cord blood	blood
12	chr6:31370000-31372400	Bivalent/Poised TSS	ES-I3 Cell Line	embryonic stem cell
13	chr6:31370000-31372400	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr6:31370000-31372400	Flanking Active TSS	Colonic Mucosa	Colon
15	chr6:31370000-31372400	Flanking Active TSS	Rectal Mucosa Donor 31	rectum
16	chr6:31370200-31372200	Flanking Active TSS	Primary B cells from peripheral blood	blood
17	chr6:31370200-31372200	Active TSS	Duodenum Smooth Muscle	Duodenum
18	chr6:31370200-31372400	Flanking Active TSS	Cortex derived primary cultured neurospheres	brain
19	chr6:31370200-31372400	Flanking Active TSS	Primary mononuclear cells fromperipheralblood	Blood
20	chr6:31370400-31372000	Active TSS	Esophagus	oesophagus
21	chr6:31370400-31372000	Bivalent/Poised TSS	Fetal Kidney	kidney
22	chr6:31370400-31372200	Flanking Active TSS	Liver	Liver
23	chr6:31370400-31372200	Active TSS	Right Atrium	heart
24	chr6:31370400-31372400	Bivalent/Poised TSS	Brain Cingulate Gyrus	brain
25	chr6:31370400-31372400	Flanking Bivalent TSS/Enh	Fetal Brain Female	brain
26	chr6:31370600-31371600	Active TSS	Gastric	stomach
27	chr6:31370600-31371600	Active TSS	Rectal Smooth Muscle	rectum
28	chr6:31370600-31371800	Active TSS	Primary T helper naive cells from peripheral blood	blood
29	chr6:31370600-31371800	Active TSS	Primary T killer naive cells fromperipheralblood	blood
30	chr6:31370600-31371800	Active TSS	GM12878-XiMat	blood
31	chr6:31370600-31372000	Active TSS	Breast Myoepithelial Primary Cells	Breast
32	chr6:31370600-31372000	Active TSS	Brain Angular Gyrus	brain
33	chr6:31370600-31372000	Bivalent/Poised TSS	Brain Dorsolateral Prefrontal Cortex	brain
34	chr6:31370600-31372200	Active TSS	H1 Cell Line	embryonic stem cell
35	chr6:31370600-31372200	Active TSS	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
36	chr6:31370600-31372200	Active TSS	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
37	chr6:31370600-31372200	Active TSS	Brain Anterior Caudate	brain
38	chr6:31370600-31372200	Active TSS	Lung	lung
39	chr6:31370600-31372400	Active TSS	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
40	chr6:31370600-31372400	Flanking Bivalent TSS/Enh	Fetal Muscle Trunk	muscle
41	chr6:31370600-31372400	Flanking Bivalent TSS/Enh	Fetal Muscle Leg	muscle
42	chr6:31370600-31372800	Active TSS	H9 Cell Line	embryonic stem cell
43	chr6:31370600-31372800	Bivalent/Poised TSS	iPS-15b Cell Line	embryonic stem cell
44	chr6:31370800-31371400	Active TSS	Thymus	Thymus
45	chr6:31370800-31371600	Active TSS	Ovary	ovary
46	chr6:31370800-31371800	Active TSS	Primary T helper naive cells fromperipheralblood	blood
47	chr6:31370800-31371800	Active TSS	Primary T killer memory cells from peripheral blood	blood
48	chr6:31370800-31371800	Active TSS	Stomach Mucosa	stomach
49	chr6:31370800-31372000	Active TSS	Primary T helper memory cells from peripheral blood 2	blood
50	chr6:31370800-31372000	Active TSS	Primary T helper memory cells from peripheral blood 1	blood

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