Variant report

Variant	rs71563313
Chromosome Location	chr6:31321300-31321301
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	ELF1	chr6:31321121-31321557	GM12878	blood:	n/a	n/a
2	POLR2A	chr6:31317673-31326364	GM12891	blood:	n/a	n/a
3	CREB1	chr6:31319774-31321540	GM12878	blood:	n/a	n/a
4	MTA3	chr6:31318396-31321612	GM12878	blood:	n/a	n/a
5	POU2F2	chr6:31317961-31325451	GM12878	blood:	n/a	chr6:31322219-31322231
6	POLR2A	chr6:31317939-31326462	GM12892	blood:	n/a	n/a
7	POLR2A	chr6:31321245-31321445	U87	brain:	n/a	n/a
8	POLR2A	chr6:31321227-31321393	MCF10A-Er-Src	breast:	n/a	n/a
9	POLR2A	chr6:31317763-31326416	GM12878	blood:	n/a	n/a
10	POLR2A	chr6:31319397-31321716	GM12878	blood:	n/a	n/a
11	POLR2A	chr6:31318399-31324063	GM12891	blood:	n/a	n/a
12	POLR2A	chr6:31319294-31325417	GM18526	blood:	n/a	n/a
13	POLR2A	chr6:31319510-31321545	IMR90	lung:	n/a	n/a
14	RUNX3	chr6:31321139-31321592	GM12878	blood:	n/a	n/a
15	POLR2A	chr6:31317961-31326519	GM12892	blood:	n/a	n/a
16	POLR2A	chr6:31317721-31326503	GM12878	blood:	n/a	n/a
17	RUNX3	chr6:31321284-31321861	GM12878	blood:	n/a	n/a
18	POLR2A	chr6:31318446-31321636	GM12878	blood:	n/a	n/a
19	POLR2A	chr6:31318010-31326009	GM12891	blood:	n/a	n/a
20	USF2	chr6:31320676-31321791	GM12878	blood:	n/a	n/a
21	BCLAF1	chr6:31319416-31321907	GM12878	blood:	n/a	chr6:31321139-31321152 chr6:31321455-31321463
22	POLR2A	chr6:31319396-31321737	GM12878	blood:	n/a	n/a
23	POLR2A	chr6:31321245-31321431	U87	brain:	n/a	n/a
24	POLR2A	chr6:31318262-31325413	GM12878	blood:	n/a	n/a
25	POU2F2	chr6:31319444-31321698	GM12878	blood:	n/a	n/a
26	ATF2	chr6:31319422-31321748	GM12878	blood:	n/a	n/a
27	FOXM1	chr6:31319923-31321533	GM12878	blood:	n/a	n/a
28	NFATC1	chr6:31319416-31321569	GM12878	blood:	n/a	n/a
29	STAT5A	chr6:31319424-31321663	GM12878	blood:	n/a	n/a
30	POLR2A	chr6:31317900-31326472	GM12892	blood:	n/a	n/a
31	POU2F2	chr6:31319413-31321677	GM12891	blood:	n/a	n/a
32	ATF2	chr6:31319512-31321668	GM12878	blood:	n/a	n/a
33	POLR2A	chr6:31318098-31325387	GM12878	blood:	n/a	n/a
34	POLR2A	chr6:31320446-31321586	HL-60	blood:	n/a	n/a
35	POU2F2	chr6:31318061-31321724	GM12891	blood:	n/a	n/a
36	POLR2A	chr6:31319402-31324224	GM12891	blood:	n/a	n/a
37	NFIC	chr6:31319394-31321878	GM12878	blood:	n/a	n/a
38	POLR2A	chr6:31317985-31326394	GM12892	blood:	n/a	n/a
39	POLR2A	chr6:31320447-31321993	HL-60	blood:	n/a	n/a
40	POLR2A	chr6:31319521-31325437	GM19193	blood:	n/a	n/a
41	POLR2A	chr6:31319538-31323652	GM12892	blood:	n/a	n/a
42	POLR2A	chr6:31320410-31321630	GM10847	blood:	n/a	n/a
43	POLR2A	chr6:31317410-31325850	GM12891	blood:	n/a	n/a
44	POLR2A	chr6:31318373-31325420	GM18505	blood:	n/a	n/a
45	POLR2A	chr6:31319574-31321635	GM18951	blood:	n/a	n/a
46	MTA3	chr6:31317858-31326579	GM12878	blood:	n/a	n/a
47	STAT5A	chr6:31318566-31322172	GM12878	blood:	n/a	n/a
48	POLR2A	chr6:31318116-31321735	GM12878	blood:	n/a	n/a
49	NFATC1	chr6:31318336-31321557	GM12878	blood:	n/a	n/a
50	PML	chr6:31318459-31322035	GM12878	blood:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr6:31232397..31234509-chr6:31319658..31321454,2	MCF-7	breast:
2	chr6:31233619..31236964-chr6:31319655..31321766,4	MCF-7	breast:

Variant related genes	Relation type
ENSG00000271581	TF binding region

Extended variants
information (count: 115 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13210028	1.00[ASN][1000 genomes]
rs2301749	0.89[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:113 , 50 per page) page: 1 2 3

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3519970	chr6:30382942-31378788	Genic enhancers Weak transcription Flanking Active TSS Active TSS Flanking Bivalent TSS/Enh Enhancers Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
2	esv3519971	chr6:30382942-31378788	Bivalent Enhancer Flanking Active TSS Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	1030 gene(s)	inside rSNPs	diseases
3	nsv1015372	chr6:30704734-31582152	Active TSS Flanking Active TSS Enhancers Weak transcription Genic enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
4	nsv538173	chr6:30704734-31582152	Flanking Active TSS Enhancers Weak transcription Active TSS Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	334 gene(s)	inside rSNPs	diseases
5	nsv1029442	chr6:31006647-31449207	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	82 gene(s)	inside rSNPs	diseases
6	nsv428140	chr6:31028290-31462106	Flanking Bivalent TSS/Enh Flanking Active TSS Enhancers Weak transcription Bivalent Enhancer Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	89 gene(s)	inside rSNPs	diseases
7	esv2758042	chr6:31028290-31497106	Weak transcription Active TSS Bivalent/Poised TSS Enhancers Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats Bivalent Enhancer	TF binding region CpG island Chromatin interactive region lncRNA miRNA	101 gene(s)	inside rSNPs	diseases
8	esv2759414	chr6:31028290-31542308	Flanking Active TSS Active TSS Bivalent/Poised TSS Weak transcription Enhancers Strong transcription Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	151 gene(s)	inside rSNPs	diseases
9	nsv1019637	chr6:31104401-31354706	Enhancers Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	57 gene(s)	inside rSNPs	diseases
10	nsv1029569	chr6:31104401-31412740	Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
11	nsv538174	chr6:31104401-31412740	Flanking Bivalent TSS/Enh Active TSS Enhancers Genic enhancers Weak transcription Bivalent/Poised TSS Strong transcription Flanking Active TSS Bivalent Enhancer Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	68 gene(s)	inside rSNPs	diseases
12	nsv1025909	chr6:31131121-31354706	Flanking Active TSS Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
13	nsv538175	chr6:31131121-31354706	Active TSS Bivalent Enhancer Weak transcription Genic enhancers Enhancers Strong transcription Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	51 gene(s)	inside rSNPs	diseases
14	nsv1015890	chr6:31131121-31449207	Enhancers Active TSS Weak transcription Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Strong transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
15	nsv538176	chr6:31131121-31449207	Weak transcription Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Strong transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	66 gene(s)	inside rSNPs	diseases
16	nsv1024887	chr6:31162849-31354706	Enhancers Weak transcription Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
17	nsv538177	chr6:31162849-31354706	Strong transcription Enhancers Bivalent Enhancer Flanking Active TSS Genic enhancers Transcr. at gene 5' and 3' Weak transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	43 gene(s)	inside rSNPs	diseases
18	nsv1015903	chr6:31162849-31412740	Enhancers Weak transcription Strong transcription Transcr. at gene 5' and 3' Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
19	nsv538178	chr6:31162849-31412740	Bivalent/Poised TSS Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Weak transcription Active TSS Bivalent Enhancer Strong transcription Genic enhancers Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	58 gene(s)	inside rSNPs	diseases
20	nsv1031682	chr6:31162849-31449207	Active TSS Bivalent Enhancer Weak transcription Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
21	nsv538179	chr6:31162849-31449207	Strong transcription Genic enhancers Weak transcription Flanking Active TSS Active TSS Enhancers Bivalent Enhancer Bivalent/Poised TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
22	esv3381377	chr6:31192213-31498578	Active TSS Weak transcription Flanking Active TSS Enhancers Strong transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
23	esv3340592	chr6:31192248-31498535	Active TSS Enhancers Flanking Active TSS Transcr. at gene 5' and 3' Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh Weak transcription ZNF genes & repeats Genic enhancers Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA miRNA	72 gene(s)	inside rSNPs	diseases
24	nsv432867	chr6:31196671-31343862	Strong transcription Bivalent/Poised TSS Weak transcription Flanking Active TSS Enhancers Active TSS Genic enhancers Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	26 gene(s)	inside rSNPs	diseases
25	nsv538180	chr6:31206639-31386279	Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
26	nsv1029142	chr6:31206639-31449207	Strong transcription Active TSS Enhancers Weak transcription Flanking Active TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	45 gene(s)	inside rSNPs	diseases
27	nsv1021052	chr6:31206639-31485736	Flanking Active TSS Weak transcription Strong transcription Flanking Bivalent TSS/Enh Bivalent Enhancer Active TSS Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	61 gene(s)	inside rSNPs	diseases
28	esv3475032	chr6:31210396-31321602	Active TSS Transcr. at gene 5' and 3' Strong transcription Genic enhancers Flanking Active TSS Weak transcription Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
29	esv3475033	chr6:31210396-31321602	Flanking Active TSS ZNF genes & repeats Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Strong transcription Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
30	esv2422229	chr6:31215949-31322934	Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh Active TSS Weak transcription Enhancers Transcr. at gene 5' and 3' Genic enhancers Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
31	esv3328153	chr6:31230846-31327330	Bivalent Enhancer Strong transcription Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
32	esv3475034	chr6:31234427-31327274	Bivalent/Poised TSS Weak transcription Flanking Active TSS Strong transcription Enhancers Transcr. at gene 5' and 3' Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
33	esv3475035	chr6:31234427-31327274	Flanking Active TSS Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Strong transcription Weak transcription Enhancers Flanking Bivalent TSS/Enh Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
34	esv6661	chr6:31236449-31321770	Active TSS Enhancers Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Weak transcription Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	17 gene(s)	inside rSNPs	diseases
35	nsv601503	chr6:31237229-31336891	Enhancers Genic enhancers Active TSS Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
36	nsv601507	chr6:31237586-31339844	Active TSS Genic enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers Bivalent/Poised TSS Bivalent Enhancer Strong transcription Weak transcription Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
37	esv3368459	chr6:31237898-31323062	Bivalent Enhancer Enhancers Genic enhancers Strong transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS ZNF genes & repeats Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
38	esv6770	chr6:31238482-31323891	Flanking Active TSS Active TSS Weak transcription Transcr. at gene 5' and 3' Genic enhancers Strong transcription Bivalent/Poised TSS Enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
39	esv6835	chr6:31239761-31325507	Weak transcription Strong transcription Enhancers Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' Bivalent Enhancer Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
40	esv7127	chr6:31240823-31326158	Active TSS Strong transcription Enhancers Flanking Active TSS Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Bivalent/Poised TSS Flanking Bivalent TSS/Enh Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	20 gene(s)	inside rSNPs	diseases
41	esv2422407	chr6:31240954-31322934	Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Enhancers Active TSS Bivalent/Poised TSS Genic enhancers Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	15 gene(s)	inside rSNPs	diseases
42	esv3512386	chr6:31241246-31326307	Active TSS Enhancers Strong transcription Bivalent Enhancer Flanking Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3' Genic enhancers Weak transcription Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
43	esv3512387	chr6:31241246-31326307	Flanking Active TSS Active TSS Strong transcription Enhancers Genic enhancers Flanking Bivalent TSS/Enh Weak transcription Bivalent Enhancer ZNF genes & repeats Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
44	esv2752834	chr6:31242621-31343821	Genic enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Transcr. at gene 5' and 3' Strong transcription Weak transcription	TF binding region CpG island Chromatin interactive region lncRNA miRNA	22 gene(s)	inside rSNPs	diseases
45	esv3447150	chr6:31242780-31326059	Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Enhancers ZNF genes & repeats Strong transcription Bivalent Enhancer Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases
46	esv3374087	chr6:31250655-31330669	Bivalent Enhancer Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3' Enhancers Active TSS Genic enhancers Strong transcription Flanking Active TSS Weak transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	17 gene(s)	inside rSNPs	diseases
47	esv2757161	chr6:31251360-31335707	Active TSS Weak transcription Genic enhancers Strong transcription Bivalent/Poised TSS Bivalent Enhancer Flanking Active TSS Enhancers Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3' ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	19 gene(s)	inside rSNPs	diseases
48	nsv1029526	chr6:31256354-31449207	Weak transcription Enhancers Transcr. at gene 5' and 3' Bivalent/Poised TSS Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS Strong transcription Genic enhancers Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
49	nsv538181	chr6:31256354-31449207	Active TSS Weak transcription Enhancers Genic enhancers Bivalent/Poised TSS Transcr. at gene 5' and 3' Strong transcription Flanking Bivalent TSS/Enh Flanking Active TSS Bivalent Enhancer ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA	42 gene(s)	inside rSNPs	diseases
50	esv1804322	chr6:31269577-31326162	Bivalent/Poised TSS Active TSS Strong transcription Flanking Active TSS Enhancers Weak transcription Transcr. at gene 5' and 3' Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA	13 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:77 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr6:31315600-31322800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr6:31315800-31323400	Weak transcription	iPS DF 19.11 Cell Line	embryonic stem cell
3	chr6:31318600-31322400	Weak transcription	NHDF-Ad	bronchial
4	chr6:31319000-31321400	Weak transcription	NHLF	lung
5	chr6:31319200-31321400	Weak transcription	Osteobl	bone
6	chr6:31319200-31322800	Weak transcription	Ovary	ovary
7	chr6:31319600-31321400	Weak transcription	Esophagus	oesophagus
8	chr6:31319600-31323800	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
9	chr6:31319800-31321400	Weak transcription	Gastric	stomach
10	chr6:31319800-31321400	Weak transcription	Rectal Smooth Muscle	rectum
11	chr6:31319800-31323600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr6:31320000-31321400	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
13	chr6:31320000-31321400	Weak transcription	Foreskin Keratinocyte Primary Cells skin02	Skin
14	chr6:31320200-31321400	Weak transcription	Stomach Mucosa	stomach
15	chr6:31320200-31321600	Enhancers	Small Intestine	intestine
16	chr6:31320400-31322400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
17	chr6:31320400-31322400	Weak transcription	Brain Substantia Nigra	brain
18	chr6:31320400-31324200	Transcr. at gene 5' and 3'	Primary T cells fromperipheralblood	blood
19	chr6:31320400-31324800	Transcr. at gene 5' and 3'	Primary T regulatory cells fromperipheralblood	blood
20	chr6:31320600-31321400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 2	blood
21	chr6:31320600-31321400	Weak transcription	Fetal Intestine Large	intestine
22	chr6:31320600-31321400	Weak transcription	Right Ventricle	heart
23	chr6:31320600-31322400	Strong transcription	Stomach Smooth Muscle	stomach
24	chr6:31320600-31322800	Weak transcription	Cortex derived primary cultured neurospheres	brain
25	chr6:31320600-31324000	Transcr. at gene 5' and 3'	Primary B cells from cord blood	blood
26	chr6:31320600-31324400	Transcr. at gene 5' and 3'	Primary T helper cells PMA-I stimulated	--
27	chr6:31320600-31324600	Transcr. at gene 5' and 3'	Primary T helper cells fromperipheralblood	blood
28	chr6:31320800-31322400	Strong transcription	Fetal Thymus	thymus
29	chr6:31320800-31322600	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
30	chr6:31320800-31322800	Weak transcription	H1 Cell Line	embryonic stem cell
31	chr6:31320800-31322800	Strong transcription	Pancreas	Pancrea
32	chr6:31320800-31323000	Weak transcription	Brain Inferior Temporal Lobe	brain
33	chr6:31320800-31324000	Transcr. at gene 5' and 3'	Primary T cells from cord blood	blood
34	chr6:31320800-31324000	Transcr. at gene 5' and 3'	Monocytes-CD14+_RO01746	blood
35	chr6:31320800-31324200	Transcr. at gene 5' and 3'	Primary B cells from peripheral blood	blood
36	chr6:31320800-31325400	Transcr. at gene 5' and 3'	Primary T helper naive cells fromperipheralblood	blood
37	chr6:31321000-31322400	Weak transcription	iPS DF 6.9 Cell Line	embryonic stem cell
38	chr6:31321000-31322400	Strong transcription	Primary hematopoietic stem cells	blood
39	chr6:31321000-31322400	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
40	chr6:31321000-31322400	Strong transcription	Fetal Muscle Leg	muscle
41	chr6:31321000-31322800	Strong transcription	IMR90 fetal lung fibroblasts Cell Line	lung
42	chr6:31321000-31322800	Weak transcription	NH-A	brain
43	chr6:31321000-31323800	Weak transcription	Dnd41	blood
44	chr6:31321000-31324000	Transcr. at gene 5' and 3'	Primary T cells effector/memory enriched fromperipheralblood	blood
45	chr6:31321200-31321400	Flanking Active TSS	Primary T helper memory cells from peripheral blood 1	blood
46	chr6:31321200-31321400	Flanking Active TSS	Primary T killer memory cells from peripheral blood	blood
47	chr6:31321200-31321400	Genic enhancers	Rectal Mucosa Donor 31	rectum
48	chr6:31321200-31321400	Genic enhancers	Sigmoid Colon	Sigmoid Colon
49	chr6:31321200-31321600	Strong transcription	Duodenum Smooth Muscle	Duodenum
50	chr6:31321200-31321800	Genic enhancers	Primary monocytes fromperipheralblood	blood

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links