Variant report

Variant	rs2302229
Chromosome Location	chr4:15827616-15827617
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15826917..15827917-chr8:136455043..136455804,2	MCF-7	breast:
2	chr4:15826370..15828037-chr4:15841878..15844425,2	K562	blood:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:12)

rs_ID	r²[population]
rs11574921	1.00[AMR][1000 genomes]
rs12644506	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs12651439	1.00[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs3796867	0.84[EUR][1000 genomes]
rs4634217	1.00[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs67396676	1.00[ASN][1000 genomes]
rs73224697	1.00[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs73226560	0.89[EUR][1000 genomes]
rs73226564	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs73226572	1.00[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs73226574	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs7436920	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
3	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15811400-15851200	Weak transcription	Rectal Mucosa Donor 29	rectum
2	chr4:15811400-15852200	Weak transcription	Spleen	Spleen
3	chr4:15811800-15842200	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr4:15812200-15840000	Strong transcription	Dnd41	blood
5	chr4:15813800-15834600	Weak transcription	Psoas Muscle	Psoas
6	chr4:15819200-15853400	Weak transcription	Duodenum Mucosa	Duodenum
7	chr4:15820600-15831200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
8	chr4:15820600-15842200	Weak transcription	Primary T cells fromperipheralblood	blood
9	chr4:15820600-15844400	Weak transcription	Primary T helper cells PMA-I stimulated	--
10	chr4:15820800-15834000	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr4:15821200-15841600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
12	chr4:15825800-15831600	Strong transcription	Fetal Thymus	thymus
13	chr4:15826200-15827800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr4:15827400-15831200	Weak transcription	Primary hematopoietic stem cells	blood
15	chr4:15827400-15834000	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr4:15827400-15834000	Weak transcription	Monocytes-CD14+_RO01746	blood
17	chr4:15827600-15830000	Weak transcription	Primary B cells from cord blood	blood
18	chr4:15827600-15830000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr4:15827600-15834000	Weak transcription	Thymus	Thymus
20	chr4:15827600-15834200	Weak transcription	Primary T cells from cord blood	blood
21	chr4:15827600-15841600	Weak transcription	Primary T helper cells fromperipheralblood	blood
22	chr4:15827600-15841800	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
23	chr4:15827600-15853400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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