Variant report

Variant	rs73226574
Chromosome Location	chr4:15810022-15810023
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:15809317..15811696-chr4:15960415..15963386,3	MCF-7	breast:

Extended variants
information (count: 16 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs11574921	0.89[AMR][1000 genomes];0.80[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs12644506	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs12651439	0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs2302229	0.89[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs3796867	0.81[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs4634217	0.89[AMR][1000 genomes];0.95[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73224697	0.89[AMR][1000 genomes];0.93[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs73226560	0.96[AFR][1000 genomes];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226564	0.96[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs73226572	0.89[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs7436920	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:5 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1012988	chr4:15597510-16091527	Weak transcription Enhancers Flanking Active TSS Flanking Bivalent TSS/Enh Bivalent Enhancer Strong transcription Active TSS Bivalent/Poised TSS ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	28 gene(s)	inside rSNPs	diseases
2	nsv10460	chr4:15757611-15818206	ZNF genes & repeats Enhancers Active TSS Bivalent/Poised TSS Weak transcription Flanking Active TSS Flanking Bivalent TSS/Enh Strong transcription Bivalent Enhancer Genic enhancers Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1013204	chr4:15762970-15836237	Enhancers Flanking Bivalent TSS/Enh Flanking Active TSS ZNF genes & repeats Weak transcription Bivalent/Poised TSS Strong transcription Bivalent Enhancer Genic enhancers Active TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
4	nsv1010597	chr4:15776181-15836237	Weak transcription Enhancers Genic enhancers Strong transcription Flanking Active TSS Active TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent/Poised TSS Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	3 gene(s)	inside rSNPs	diseases
5	nsv916742	chr4:15797994-16064232	Strong transcription Enhancers Weak transcription ZNF genes & repeats Flanking Bivalent TSS/Enh Bivalent Enhancer Flanking Active TSS Genic enhancers Active TSS Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	12 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:27 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:15794000-15812200	Genic enhancers	Dnd41	blood
2	chr4:15807800-15810200	Weak transcription	Primary neutrophils fromperipheralblood	blood
3	chr4:15807800-15810400	Weak transcription	Duodenum Mucosa	Duodenum
4	chr4:15807800-15810600	Weak transcription	Primary T helper naive cells from peripheral blood	blood
5	chr4:15808000-15810600	Weak transcription	Adipose Nuclei	Adipose
6	chr4:15808000-15813200	Weak transcription	ES-I3 Cell Line	embryonic stem cell
7	chr4:15808200-15811400	Enhancers	Spleen	Spleen
8	chr4:15808400-15810400	Weak transcription	Primary Natural Killer cells fromperipheralblood	blood
9	chr4:15808400-15819400	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
10	chr4:15808600-15810800	Weak transcription	Skeletal Muscle Female	skeletal muscle
11	chr4:15808800-15810400	Weak transcription	Primary T helper cells fromperipheralblood	blood
12	chr4:15809200-15810400	Weak transcription	Thymus	Thymus
13	chr4:15809200-15810800	Weak transcription	Left Ventricle	heart
14	chr4:15809400-15810400	Enhancers	Primary monocytes fromperipheralblood	blood
15	chr4:15809400-15810600	Enhancers	Primary B cells from cord blood	blood
16	chr4:15809400-15810800	Enhancers	Primary T cells from cord blood	blood
17	chr4:15809400-15811400	Enhancers	Primary T helper naive cells fromperipheralblood	blood
18	chr4:15809400-15811400	Enhancers	Fetal Thymus	thymus
19	chr4:15809600-15810200	Enhancers	Monocytes-CD14+_RO01746	blood
20	chr4:15809600-15810400	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr4:15809600-15811400	Enhancers	Primary hematopoietic stem cells	blood
22	chr4:15809800-15810600	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr4:15809800-15810800	Enhancers	Psoas Muscle	Psoas
24	chr4:15809800-15811200	Flanking Active TSS	GM12878-XiMat	blood
25	chr4:15809800-15811400	Enhancers	Primary B cells from peripheral blood	blood
26	chr4:15810000-15810400	Weak transcription	Skeletal Muscle Male	skeletal muscle
27	chr4:15810000-15811400	Enhancers	Primary T helper cells PMA-I stimulated	--

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