Variant report

Variant	rs2303438
Chromosome Location	chr11:19186472-19186473
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr11:19185857..19188354-chr11:19242363..19244563,2	K562	blood:

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11025022	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs11025027	1.00[EUR][1000 genomes]
rs12223951	1.00[CHB][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3740964	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7930821	1.00[EUR][1000 genomes]
rs7938838	1.00[EUR][1000 genomes]
rs7941959	1.00[EUR][1000 genomes]
rs7942071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:120 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19140800-19186800	Weak transcription	Colonic Mucosa	Colon
2	chr11:19143400-19201600	Weak transcription	Primary T killer memory cells from peripheral blood	blood
3	chr11:19143600-19197400	Weak transcription	Small Intestine	intestine
4	chr11:19153200-19186600	Weak transcription	Aorta	Aorta
5	chr11:19156600-19193200	Weak transcription	Fetal Stomach	stomach
6	chr11:19156800-19193800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr11:19156800-19194200	Weak transcription	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
8	chr11:19161600-19194400	Weak transcription	HSMM	muscle
9	chr11:19162800-19203000	Weak transcription	ES-I3 Cell Line	embryonic stem cell
10	chr11:19164000-19200400	Weak transcription	Fetal Brain Male	brain
11	chr11:19166400-19203000	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
12	chr11:19167000-19194200	Weak transcription	Fetal Kidney	kidney
13	chr11:19167400-19186600	Weak transcription	Brain Inferior Temporal Lobe	brain
14	chr11:19167400-19194200	Weak transcription	Brain Hippocampus Middle	brain
15	chr11:19167800-19199400	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
16	chr11:19168000-19201600	Weak transcription	Rectal Smooth Muscle	rectum
17	chr11:19169000-19186800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
18	chr11:19169000-19189000	Weak transcription	Fetal Intestine Small	intestine
19	chr11:19169000-19194600	Weak transcription	Primary T killer naive cells fromperipheralblood	blood
20	chr11:19169400-19197800	Weak transcription	Colon Smooth Muscle	Colon
21	chr11:19169400-19200400	Weak transcription	Brain Angular Gyrus	brain
22	chr11:19170000-19200200	Strong transcription	Primary B cells from cord blood	blood
23	chr11:19171000-19190200	Weak transcription	NH-A	brain
24	chr11:19171600-19188000	Weak transcription	HMEC	breast
25	chr11:19171600-19192400	Weak transcription	Placenta Amnion	Placenta Amnion
26	chr11:19172000-19186800	Weak transcription	Hela-S3	cervix
27	chr11:19172200-19208600	Weak transcription	Brain Substantia Nigra	brain
28	chr11:19172600-19186800	Weak transcription	NHDF-Ad	bronchial
29	chr11:19172800-19194200	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
30	chr11:19172800-19194400	Weak transcription	Brain Germinal Matrix	brain
31	chr11:19173400-19196800	Weak transcription	Pancreatic Islets	Pancreatic Islet
32	chr11:19174000-19186600	Weak transcription	Spleen	Spleen
33	chr11:19174000-19209000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
34	chr11:19174800-19189800	Weak transcription	Fetal Muscle Trunk	muscle
35	chr11:19175600-19190600	Strong transcription	iPS-20b Cell Line	embryonic stem cell
36	chr11:19176400-19213400	Weak transcription	Psoas Muscle	Psoas
37	chr11:19176600-19186600	Weak transcription	Fetal Muscle Leg	muscle
38	chr11:19176600-19194200	Weak transcription	Pancreas	Pancrea
39	chr11:19176800-19186600	Weak transcription	Primary T helper naive cells fromperipheralblood	blood
40	chr11:19176800-19196000	Weak transcription	Right Ventricle	heart
41	chr11:19177800-19192400	Strong transcription	HUVEC	blood vessel
42	chr11:19177800-19199000	Strong transcription	Rectal Mucosa Donor 29	rectum
43	chr11:19178200-19199800	Strong transcription	Primary T cells from cord blood	blood
44	chr11:19178800-19194600	Weak transcription	Fetal Lung	lung
45	chr11:19179000-19186600	Weak transcription	Gastric	stomach
46	chr11:19179000-19194200	Weak transcription	Stomach Mucosa	stomach
47	chr11:19179600-19186600	Weak transcription	Adipose Nuclei	Adipose
48	chr11:19179800-19194200	Weak transcription	Stomach Smooth Muscle	stomach
49	chr11:19181200-19194000	Weak transcription	Liver	Liver
50	chr11:19181800-19186600	Weak transcription	Fetal Brain Female	brain

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