Variant report

Variant	rs3740964
Chromosome Location	chr11:19138991-19138992
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type
1	chr11:19137492..19139036-chr11:19169967..19172250,2	MCF-7	breast:
2	chr11:19092441..19093031-chr11:19138770..19139494,2	K562	blood:
3	chr11:19138651..19139198-chr20:30192938..30193620,2	Hela-S3	cervix:
4	chr11:19092360..19092956-chr11:19138799..19139467,2	MCF-7	breast:
5	chr11:19081397..19083267-chr11:19138143..19140482,2	MCF-7	breast:
6	chr11:19138213..19140336-chr11:19296347..19298663,2	MCF-7	breast:

Variant related genes	Relation type
ENSG00000254544	Chromatin interaction
ENSG00000183695	Chromatin interaction
ENSG00000177054	Chromatin interaction
ENSG00000125968	Chromatin interaction

Extended variants
information (count: 10 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:8)

rs_ID	r²[population]
rs11025022	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11025027	1.00[EUR][1000 genomes]
rs12223951	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2303438	0.81[AMR][1000 genomes];1.00[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs7930821	1.00[EUR][1000 genomes]
rs7938838	1.00[EUR][1000 genomes]
rs7941959	1.00[EUR][1000 genomes]
rs7942071	1.00[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1040805	chr11:19037871-19892803	Enhancers Bivalent Enhancer Weak transcription Transcr. at gene 5' and 3' Flanking Active TSS Genic enhancers Flanking Bivalent TSS/Enh Active TSS Bivalent/Poised TSS Strong transcription ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases
2	nsv540957	chr11:19037871-19892803	Active TSS Weak transcription Flanking Bivalent TSS/Enh Enhancers Bivalent Enhancer Bivalent/Poised TSS Flanking Active TSS Genic enhancers Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA miRNA target site	25 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:127 , 50 per page) page: 1 2 3

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr11:19138000-19139200	Active TSS	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
2	chr11:19138000-19139200	Active TSS	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
3	chr11:19138000-19139200	Active TSS	Rectal Smooth Muscle	rectum
4	chr11:19138000-19139200	Active TSS	Osteobl	bone
5	chr11:19138000-19139400	Active TSS	Colon Smooth Muscle	Colon
6	chr11:19138000-19139400	Active TSS	Rectal Mucosa Donor 29	rectum
7	chr11:19138000-19139600	Active TSS	ES-I3 Cell Line	embryonic stem cell
8	chr11:19138000-19139600	Active TSS	iPS-20b Cell Line	embryonic stem cell
9	chr11:19138000-19139600	Flanking Active TSS	Primary B cells from cord blood	blood
10	chr11:19138000-19139800	Active TSS	HUES64 Cell Line	embryonic stem cell
11	chr11:19138000-19139800	Active TSS	iPS-15b Cell Line	embryonic stem cell
12	chr11:19138000-19140000	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Male	--
13	chr11:19138000-19140200	Flanking Active TSS	Primary hematopoietic stem cells G-CSF-mobilized Female	--
14	chr11:19138200-19139000	Bivalent/Poised TSS	Fetal Muscle Leg	muscle
15	chr11:19138200-19139000	Active TSS	Psoas Muscle	Psoas
16	chr11:19138200-19139200	Active TSS	H9 Derived Neuron Cultured Cells	ES cell derived
17	chr11:19138200-19139200	Active TSS	Primary hematopoietic stem cells short term culture	blood
18	chr11:19138200-19139200	Active TSS	Primary T helper naive cells from peripheral blood	blood
19	chr11:19138200-19139200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin01	Skin
20	chr11:19138200-19139200	Bivalent/Poised TSS	Foreskin Melanocyte Primary Cells skin03	Skin
21	chr11:19138200-19139200	Active TSS	Brain Substantia Nigra	brain
22	chr11:19138200-19139200	Bivalent/Poised TSS	Fetal Stomach	stomach
23	chr11:19138200-19139200	Active TSS	Fetal Thymus	thymus
24	chr11:19138200-19139400	Active TSS	Breast Myoepithelial Primary Cells	Breast
25	chr11:19138200-19139400	Active TSS	Primary T killer memory cells from peripheral blood	blood
26	chr11:19138200-19139400	Active TSS	Brain Angular Gyrus	brain
27	chr11:19138200-19139400	Active TSS	Brain Cingulate Gyrus	brain
28	chr11:19138200-19139400	Active TSS	Fetal Kidney	kidney
29	chr11:19138200-19139600	Active TSS	ES-WA7 Cell Line	embryonic stem cell
30	chr11:19138200-19139600	Active TSS	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
31	chr11:19138200-19139600	Active TSS	HUES48 Cell Line	embryonic stem cell
32	chr11:19138200-19139600	Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
33	chr11:19138200-19139600	Flanking Active TSS	Primary hematopoietic stem cells	blood
34	chr11:19138200-19139600	Active TSS	Colonic Mucosa	Colon
35	chr11:19138200-19139600	Active TSS	Pancreatic Islets	Pancreatic Islet
36	chr11:19138200-19139600	Active TSS	Ovary	ovary
37	chr11:19138200-19139600	Active TSS	Right Atrium	heart
38	chr11:19138200-19139600	Active TSS	Right Ventricle	heart
39	chr11:19138200-19139600	Active TSS	HSMM	muscle
40	chr11:19138200-19139800	Active TSS	H9 Cell Line	embryonic stem cell
41	chr11:19138200-19139800	Active TSS	iPS DF 19.11 Cell Line	embryonic stem cell
42	chr11:19138200-19139800	Active TSS	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
43	chr11:19138200-19139800	Bivalent/Poised TSS	Stomach Smooth Muscle	stomach
44	chr11:19138200-19139800	Active TSS	NHLF	lung
45	chr11:19138200-19140000	Active TSS	Foreskin Fibroblast Primary Cells skin02	Skin
46	chr11:19138200-19140000	Flanking Active TSS	Brain Germinal Matrix	brain
47	chr11:19138200-19140000	Active TSS	Brain Inferior Temporal Lobe	brain
48	chr11:19138200-19140000	Active TSS	Duodenum Smooth Muscle	Duodenum
49	chr11:19138200-19140000	Active TSS	NHDF-Ad	bronchial
50	chr11:19138400-19139000	Active TSS	Primary Natural Killer cells fromperipheralblood	blood

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