Variant report

Variant	rs2304897
Chromosome Location	chr15:45981117-45981118
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr15:45980031..45981543-chr15:45985356..45987989,2	MCF-7	breast:

Extended variants
information (count: 20 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:18)

rs_ID	r²[population]
rs11070463	0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11635305	0.94[AMR][1000 genomes];0.96[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11638261	0.82[CEU][hapmap];0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs12911261	0.97[ASN][1000 genomes]
rs17553285	0.95[CEU][hapmap];0.89[AMR][1000 genomes];0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs2289579	1.00[CEU][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008308	0.89[AMR][1000 genomes];0.88[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62008309	0.89[AMR][1000 genomes];0.89[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62008313	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62008314	0.93[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008315	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008316	0.94[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62008317	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8027705	0.84[ASN][1000 genomes]
rs8034672	0.97[ASN][1000 genomes]
rs8038076	0.98[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs8039295	0.95[ASN][1000 genomes]
rs8040171	0.97[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv904189	chr15:45821158-46298458	Weak transcription Flanking Active TSS Enhancers Strong transcription Active TSS Transcr. at gene 5' and 3' Bivalent/Poised TSS Genic enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA miRNA target site	58 gene(s)	inside rSNPs	diseases
2	nsv904191	chr15:45902779-46381874	Flanking Active TSS Bivalent Enhancer Weak transcription Enhancers Active TSS Flanking Bivalent TSS/Enh Bivalent/Poised TSS Strong transcription Genic enhancers ZNF genes & repeats Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	29 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:85 , 50 per page) page: 1 2

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr15:45950600-45988400	Strong transcription	Monocytes-CD14+_RO01746	blood
2	chr15:45950800-45986000	Strong transcription	Primary T cells fromperipheralblood	blood
3	chr15:45953000-45984000	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
4	chr15:45953400-45986200	Strong transcription	Rectal Mucosa Donor 29	rectum
5	chr15:45954800-45981600	Weak transcription	Brain Substantia Nigra	brain
6	chr15:45957400-45981200	Weak transcription	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
7	chr15:45957400-45985800	Weak transcription	HSMMtube	muscle
8	chr15:45958400-45986400	Weak transcription	Fetal Muscle Leg	muscle
9	chr15:45959600-45986200	Strong transcription	Primary Natural Killer cells fromperipheralblood	blood
10	chr15:45960000-45986000	Strong transcription	Duodenum Smooth Muscle	Duodenum
11	chr15:45960200-45987800	Strong transcription	Primary monocytes fromperipheralblood	blood
12	chr15:45960400-45985200	Strong transcription	Primary T helper cells PMA-I stimulated	--
13	chr15:45960400-45985800	Strong transcription	Primary T helper cells fromperipheralblood	blood
14	chr15:45960400-45986200	Strong transcription	Duodenum Mucosa	Duodenum
15	chr15:45960400-45987000	Strong transcription	Foreskin Keratinocyte Primary Cells skin03	Skin
16	chr15:45960400-45988200	Strong transcription	Rectal Mucosa Donor 31	rectum
17	chr15:45960600-45985800	Strong transcription	Primary T cells from cord blood	blood
18	chr15:45960600-45986000	Strong transcription	Primary B cells from peripheral blood	blood
19	chr15:45960600-45986000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
20	chr15:45960600-45986600	Strong transcription	Primary B cells from cord blood	blood
21	chr15:45960600-45987200	Strong transcription	Primary mononuclear cells fromperipheralblood	Blood
22	chr15:45960800-45985600	Strong transcription	Primary T regulatory cells fromperipheralblood	blood
23	chr15:45960800-45987000	Strong transcription	Liver	Liver
24	chr15:45961800-45987000	Strong transcription	Stomach Smooth Muscle	stomach
25	chr15:45963000-45982200	Weak transcription	Brain Hippocampus Middle	brain
26	chr15:45963200-45984400	Weak transcription	Fetal Kidney	kidney
27	chr15:45964800-45986000	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
28	chr15:45966600-45981400	Weak transcription	HSMM	muscle
29	chr15:45968800-45985000	Weak transcription	NHLF	lung
30	chr15:45968800-45989600	Weak transcription	Placenta	Placenta
31	chr15:45970400-45988200	Strong transcription	Sigmoid Colon	Sigmoid Colon
32	chr15:45970800-45982000	Strong transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
33	chr15:45971000-45989000	Strong transcription	Primary neutrophils fromperipheralblood	blood
34	chr15:45971600-45986400	Strong transcription	Fetal Intestine Small	intestine
35	chr15:45972000-45986000	Strong transcription	Spleen	Spleen
36	chr15:45972200-45985800	Strong transcription	Skeletal Muscle Male	skeletal muscle
37	chr15:45972400-45984200	Strong transcription	Left Ventricle	heart
38	chr15:45972600-45986000	Strong transcription	Esophagus	oesophagus
39	chr15:45972600-45986400	Strong transcription	Primary T cells effector/memory enriched fromperipheralblood	blood
40	chr15:45973000-45985800	Strong transcription	Primary T helper 17 cells PMA-I stimulated	--
41	chr15:45973000-45986000	Strong transcription	Skeletal Muscle Female	skeletal muscle
42	chr15:45973200-45985800	Strong transcription	Adipose Nuclei	Adipose
43	chr15:45973200-45986200	Strong transcription	Lung	lung
44	chr15:45974800-45985200	Strong transcription	Fetal Intestine Large	intestine
45	chr15:45974800-45985400	Strong transcription	HMEC	breast
46	chr15:45975400-45989400	Weak transcription	HepG2	liver
47	chr15:45975600-45981200	Weak transcription	Primary T helper naive cells from peripheral blood	blood
48	chr15:45975600-45981200	Weak transcription	Ovary	ovary
49	chr15:45975800-45981200	Weak transcription	Psoas Muscle	Psoas
50	chr15:45975800-45984600	Weak transcription	Osteobl	bone

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