Variant report

Variant	rs2309478
Chromosome Location	chr4:27089819-27089820
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr4:27051663..27053703-chr4:27087904..27090064,2	MCF-7	breast:
2	chr4:27089607..27092447-chr4:27116459..27118103,2	MCF-7	breast:

Extended variants
information (count: 5 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:2)

rs_ID	r²[population]
rs13109212	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes]
rs7677573	0.88[AMR][1000 genomes];0.92[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv4279	chr4:27056372-27101774	Bivalent/Poised TSS Weak transcription Bivalent Enhancer Enhancers Active TSS Flanking Bivalent TSS/Enh Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases
2	nsv1002082	chr4:27078850-27377252	Flanking Bivalent TSS/Enh Weak transcription Enhancers Bivalent Enhancer Active TSS Bivalent/Poised TSS Flanking Active TSS Genic enhancers ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases
3	nsv997608	chr4:27085524-27371848	Enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Weak transcription Flanking Active TSS Bivalent Enhancer Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	8 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr4:27087200-27090000	Weak transcription	Brain Hippocampus Middle	brain
2	chr4:27087200-27092800	Enhancers	ES-I3 Cell Line	embryonic stem cell
3	chr4:27087400-27091000	Weak transcription	Lung	lung
4	chr4:27087400-27095800	Weak transcription	Pancreas	Pancrea
5	chr4:27087800-27092200	Weak transcription	Ganglion Eminence derived primary cultured neurospheres	brain
6	chr4:27088400-27091000	Enhancers	ES-WA7 Cell Line	embryonic stem cell
7	chr4:27088600-27090000	Weak transcription	ES-UCSF4 Cell Line	embryonic stem cell
8	chr4:27088800-27090600	Enhancers	H9 Derived Neuronal Progenitor Cultured Cells	ES cell derived
9	chr4:27089000-27090600	Enhancers	iPS DF 6.9 Cell Line	embryonic stem cell
10	chr4:27089000-27090800	Enhancers	H1 Cell Line	embryonic stem cell
11	chr4:27089000-27090800	Enhancers	iPS-18 Cell Line	embryonic stem cell
12	chr4:27089000-27092000	Enhancers	H9 Cell Line	embryonic stem cell
13	chr4:27089000-27093200	Enhancers	HUES64 Cell Line	embryonic stem cell
14	chr4:27089200-27090600	Enhancers	HUES48 Cell Line	embryonic stem cell
15	chr4:27089400-27090400	Enhancers	Cortex derived primary cultured neurospheres	brain
16	chr4:27089400-27090600	Enhancers	iPS DF 19.11 Cell Line	embryonic stem cell
17	chr4:27089400-27092000	Enhancers	H1 BMP4 Derived Trophoblast Cultured Cells	ES cell derived
18	chr4:27089400-27092600	Enhancers	iPS-15b Cell Line	embryonic stem cell
19	chr4:27089400-27093200	Enhancers	HUES6 Cell Line	embryonic stem cell
20	chr4:27089600-27090600	Bivalent Enhancer	Primary monocytes fromperipheralblood	blood
21	chr4:27089600-27090600	Bivalent Enhancer	Monocytes-CD14+_RO01746	blood
22	chr4:27089600-27091800	Bivalent Enhancer	iPS-20b Cell Line	embryonic stem cell

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