Variant report

Variant	rs2309776
Chromosome Location	chr2:100729091-100729092
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 43 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:39)

rs_ID	r²[population]
rs10177007	0.86[EUR][1000 genomes]
rs10185707	0.84[EUR][1000 genomes]
rs10198062	0.84[EUR][1000 genomes]
rs10199628	0.90[EUR][1000 genomes]
rs10211423	0.84[EUR][1000 genomes]
rs13392222	0.93[EUR][1000 genomes]
rs17023453	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17023459	0.83[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs17023512	0.89[EUR][1000 genomes]
rs17023516	0.85[EUR][1000 genomes]
rs17352745	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17352801	0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17352808	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17437101	0.80[EUR][1000 genomes]
rs17437248	0.81[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs17437282	0.94[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs17437338	0.84[AFR][1000 genomes];0.87[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs2666347	0.80[EUR][1000 genomes]
rs4485586	0.80[EUR][1000 genomes]
rs62149305	0.80[EUR][1000 genomes]
rs62149307	0.80[EUR][1000 genomes]
rs62149310	0.80[EUR][1000 genomes]
rs62149316	0.85[EUR][1000 genomes]
rs62149319	0.89[AFR][1000 genomes];0.90[EUR][1000 genomes]
rs62149320	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62149321	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62149341	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs62149343	0.97[EUR][1000 genomes]
rs62149348	0.87[EUR][1000 genomes]
rs62150260	0.89[EUR][1000 genomes]
rs6743817	0.90[EUR][1000 genomes]
rs6745099	0.89[EUR][1000 genomes]
rs6748652	0.89[EUR][1000 genomes]
rs6750214	0.91[EUR][1000 genomes]
rs72819167	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs72819176	0.88[EUR][1000 genomes]
rs72819177	0.85[EUR][1000 genomes]
rs72819180	0.84[EUR][1000 genomes]
rs72819181	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
3	nsv458707	chr2:100687778-100753490	Weak transcription Enhancers Bivalent Enhancer Bivalent/Poised TSS Strong transcription Genic enhancers Active TSS Flanking Active TSS Transcr. at gene 5' and 3' Flanking Bivalent TSS/Enh ZNF genes & repeats	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases
4	nsv582529	chr2:100687778-100753490	Enhancers Bivalent Enhancer Flanking Bivalent TSS/Enh Weak transcription Bivalent/Poised TSS Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Transcr. at gene 5' and 3' Genic enhancers	TF binding region CpG island Chromatin interactive region lncRNA	2 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:17 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100722000-100729400	Weak transcription	Dnd41	blood
2	chr2:100722400-100730000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
3	chr2:100726800-100730000	Weak transcription	Spleen	Spleen
4	chr2:100726800-100730400	Weak transcription	Primary hematopoietic stem cells	blood
5	chr2:100727200-100729400	Weak transcription	Thymus	Thymus
6	chr2:100727200-100730600	Genic enhancers	Primary B cells from peripheral blood	blood
7	chr2:100727600-100729600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
8	chr2:100727600-100730600	Enhancers	Primary T cells from cord blood	blood
9	chr2:100727800-100729600	Weak transcription	Primary T helper cells fromperipheralblood	blood
10	chr2:100727800-100729800	Weak transcription	Primary monocytes fromperipheralblood	blood
11	chr2:100727800-100729800	Genic enhancers	Primary B cells from cord blood	blood
12	chr2:100727800-100730000	Weak transcription	Monocytes-CD14+_RO01746	blood
13	chr2:100728400-100729800	Strong transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
14	chr2:100728600-100731800	Enhancers	Primary T helper naive cells fromperipheralblood	blood
15	chr2:100728800-100729200	Weak transcription	Primary T helper cells PMA-I stimulated	--
16	chr2:100728800-100729400	Enhancers	Primary Natural Killer cells fromperipheralblood	blood
17	chr2:100728800-100732000	Enhancers	Fetal Thymus	thymus

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