Variant report

Variant	rs62149341
Chromosome Location	chr2:100657064-100657065
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 46 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:44)

rs_ID	r²[population]
rs10177007	0.83[EUR][1000 genomes]
rs10185707	0.91[EUR][1000 genomes]
rs10198062	0.91[EUR][1000 genomes]
rs10199628	0.83[EUR][1000 genomes]
rs10211423	0.91[EUR][1000 genomes]
rs13392222	0.97[EUR][1000 genomes]
rs17023453	0.98[EUR][1000 genomes]
rs17023459	0.98[EUR][1000 genomes]
rs17023512	0.82[EUR][1000 genomes]
rs17023516	0.82[EUR][1000 genomes]
rs17352514	0.85[EUR][1000 genomes]
rs17352745	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17352801	0.80[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17352808	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17436983	0.84[EUR][1000 genomes]
rs17437101	0.87[EUR][1000 genomes]
rs17437248	0.92[EUR][1000 genomes]
rs17437282	0.89[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs17437338	0.89[AFR][1000 genomes];0.83[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs2309776	0.84[AFR][1000 genomes];0.92[EUR][1000 genomes]
rs4485586	0.87[EUR][1000 genomes]
rs62149303	0.83[EUR][1000 genomes]
rs62149304	0.85[EUR][1000 genomes]
rs62149305	0.87[EUR][1000 genomes]
rs62149307	0.87[EUR][1000 genomes]
rs62149310	0.87[EUR][1000 genomes]
rs62149311	0.86[EUR][1000 genomes]
rs62149314	0.86[EUR][1000 genomes]
rs62149316	0.93[EUR][1000 genomes]
rs62149319	0.84[AFR][1000 genomes];0.98[EUR][1000 genomes]
rs62149320	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62149321	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs62149343	0.96[EUR][1000 genomes]
rs62149348	0.86[EUR][1000 genomes]
rs62150260	0.82[EUR][1000 genomes]
rs6719214	0.85[EUR][1000 genomes]
rs6743817	0.83[EUR][1000 genomes]
rs6745099	0.82[EUR][1000 genomes]
rs6748652	0.82[EUR][1000 genomes]
rs6750214	0.99[EUR][1000 genomes]
rs72819167	1.00[AFR][1000 genomes];0.89[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs72819176	0.81[EUR][1000 genomes]
rs72819177	0.82[EUR][1000 genomes]
rs72819180	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv1003343	chr2:100241560-100848900	Weak transcription Enhancers Strong transcription Active TSS Bivalent Enhancer Flanking Active TSS ZNF genes & repeats Genic enhancers Bivalent/Poised TSS Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases
2	nsv535843	chr2:100241560-100848900	Genic enhancers Enhancers Weak transcription Bivalent Enhancer Active TSS Strong transcription Flanking Active TSS Bivalent/Poised TSS ZNF genes & repeats Flanking Bivalent TSS/Enh Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	4 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr2:100624800-100657800	Weak transcription	Brain Germinal Matrix	brain
2	chr2:100633600-100660600	Weak transcription	Lung	lung
3	chr2:100637200-100658400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
4	chr2:100639000-100660600	Weak transcription	Primary T cells from cord blood	blood
5	chr2:100644600-100668400	Weak transcription	Primary hematopoietic stem cells	blood
6	chr2:100646400-100662600	Weak transcription	Gastric	stomach
7	chr2:100648200-100666800	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
8	chr2:100651800-100659600	Weak transcription	Left Ventricle	heart
9	chr2:100652800-100661400	Weak transcription	Ovary	ovary
10	chr2:100653200-100667200	Weak transcription	Primary mononuclear cells fromperipheralblood	Blood
11	chr2:100653600-100657600	Weak transcription	Fetal Lung	lung
12	chr2:100653800-100657800	Weak transcription	Fetal Brain Male	brain
13	chr2:100654800-100668200	Weak transcription	Thymus	Thymus
14	chr2:100655800-100661800	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
15	chr2:100656000-100659000	Strong transcription	Primary B cells from cord blood	blood
16	chr2:100656200-100658800	Strong transcription	Primary B cells from peripheral blood	blood
17	chr2:100656400-100658400	Enhancers	hESC Derived CD56+ Ectoderm Cultured Cells	ES cell derived
18	chr2:100656400-100680000	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
19	chr2:100656600-100657400	Weak transcription	Spleen	Spleen
20	chr2:100656600-100658400	Weak transcription	Primary monocytes fromperipheralblood	blood
21	chr2:100656600-100658400	Weak transcription	Monocytes-CD14+_RO01746	blood
22	chr2:100656600-100658800	Weak transcription	Primary neutrophils fromperipheralblood	blood
23	chr2:100656600-100686600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
24	chr2:100656800-100658600	Enhancers	Fetal Brain Female	brain
25	chr2:100656800-100662800	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr2:100657000-100657200	Enhancers	Brain Inferior Temporal Lobe	brain
27	chr2:100657000-100657600	Genic enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
28	chr2:100657000-100661000	Weak transcription	Fetal Heart	heart

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