Variant report

Variant	rs2311846
Chromosome Location	chr10:45545941-45545942
allele	C/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 25 )
Associated
traits (count: 3 )

rSNPs within LD-proxies of this variant (count:23)

rs_ID	r²[population]
rs10751364	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751365	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.95[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793581	0.93[AFR][1000 genomes];0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900160	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs10900161	0.83[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11471	0.81[ASW][hapmap];0.86[CHB][hapmap];0.82[CHD][hapmap];0.89[GIH][hapmap];0.90[JPT][hapmap];0.97[TSI][hapmap];0.86[YRI][hapmap];0.81[AFR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1332621	0.87[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs1343628	0.93[AFR][1000 genomes];0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2095089	0.82[EUR][1000 genomes]
rs3862870	0.83[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs3901394	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3902673	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs3908729	0.84[CEU][hapmap];0.84[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs4027069	0.88[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4097763	0.89[AFR][1000 genomes];0.90[AMR][1000 genomes]
rs4456217	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs7896524	0.83[AFR][1000 genomes];0.83[AMR][1000 genomes]
rs7896801	0.80[CEU][hapmap]
rs7898523	0.91[AFR][1000 genomes];0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7904261	0.81[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7905526	0.83[AFR][1000 genomes];0.80[AMR][1000 genomes]
rs7918824	0.85[AFR][1000 genomes];0.82[AMR][1000 genomes]
rs9971272	0.84[AFR][1000 genomes];0.82[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

mRNA abundance (count:3)

SNP	Gene	Cis/trans	Tissue	Source
rs2311846	RASGEF1A	cis	cerebellum	SCAN
rs2311846	RASSF4	cis	cerebellum	SCAN
rs2311846	LOC84856	cis	cerebellum	SCAN

Chromatin state (count:1 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45545600-45546200	Enhancers	Fetal Brain Female	brain

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