Variant report

Variant	rs3901394
Chromosome Location	chr10:45537974-45537975
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 26 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs10751364	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10751365	1.00[CEU][hapmap];0.95[CHB][hapmap];1.00[JPT][hapmap];0.90[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs10793581	0.88[AFR][1000 genomes];0.98[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs10900160	0.91[AMR][1000 genomes]
rs10900161	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs11471	0.86[CHB][hapmap];0.90[JPT][hapmap];0.94[YRI][hapmap];0.96[AFR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1332621	0.83[AMR][1000 genomes]
rs1343628	0.88[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1578875	0.86[AMR][1000 genomes]
rs2095089	0.82[EUR][1000 genomes]
rs2311846	0.85[AFR][1000 genomes];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs3862870	0.91[AMR][1000 genomes]
rs3902673	0.81[CEU][hapmap];0.83[AMR][1000 genomes]
rs3908729	0.81[CEU][hapmap];0.80[AFR][1000 genomes];0.87[AMR][1000 genomes]
rs4027069	0.83[AMR][1000 genomes]
rs4097763	0.83[AMR][1000 genomes]
rs4456217	0.91[AMR][1000 genomes]
rs7896524	0.90[AMR][1000 genomes]
rs7896801	0.80[CEU][hapmap]
rs7898523	0.84[AFR][1000 genomes];0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs7904261	0.90[AMR][1000 genomes]
rs7905526	0.90[AMR][1000 genomes]
rs7918824	0.91[AMR][1000 genomes]
rs9971272	0.80[AFR][1000 genomes];0.91[AMR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv831846	chr10:45322236-45556370	Bivalent Enhancer Active TSS Enhancers Weak transcription Flanking Active TSS ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent/Poised TSS Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA	20 gene(s)	inside rSNPs	diseases
2	nsv831848	chr10:45490176-45667670	Enhancers Weak transcription Flanking Bivalent TSS/Enh Active TSS Flanking Active TSS Strong transcription ZNF genes & repeats Genic enhancers Bivalent Enhancer Transcr. at gene 5' and 3'	TF binding region CpG island Chromatin interactive region lncRNA miRNA	18 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:3 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr10:45535800-45539600	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr10:45536800-45539400	Weak transcription	ES-I3 Cell Line	embryonic stem cell
3	chr10:45536800-45539400	Weak transcription	HUES6 Cell Line	embryonic stem cell

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