Variant report

Variant	rs2320171
Chromosome Location	chr3:69904249-69904250
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69903186..69905172-chr3:69908164..69910462,2	K562	blood:

Extended variants
information (count: 79 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:77)

rs_ID	r²[population]
rs1036051	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1036052	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs1036053	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs11708183	0.82[EUR][1000 genomes]
rs11715024	0.82[EUR][1000 genomes]
rs11717837	0.82[EUR][1000 genomes]
rs11917130	0.81[EUR][1000 genomes]
rs11918650	0.80[EUR][1000 genomes]
rs12108009	0.82[EUR][1000 genomes]
rs13066535	0.82[EUR][1000 genomes]
rs13066581	0.82[EUR][1000 genomes]
rs13071707	0.83[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs13320443	0.81[EUR][1000 genomes]
rs13320724	0.81[EUR][1000 genomes]
rs13324851	0.81[EUR][1000 genomes]
rs13327273	0.81[EUR][1000 genomes]
rs1367370	0.93[CHB][hapmap]
rs1367371	0.81[EUR][1000 genomes]
rs1430604	0.93[CHB][hapmap]
rs1430605	0.82[EUR][1000 genomes]
rs1549744	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs17006493	0.82[EUR][1000 genomes]
rs17638538	0.93[CHB][hapmap]
rs1812075	0.83[EUR][1000 genomes]
rs1897159	0.93[CHB][hapmap]
rs2082173	0.83[EUR][1000 genomes]
rs2116001	0.82[EUR][1000 genomes]
rs2163326	0.93[CHB][hapmap]
rs2163327	0.83[AMR][1000 genomes];0.85[EUR][1000 genomes]
rs2217456	0.85[CHB][hapmap];0.82[EUR][1000 genomes]
rs2874181	0.80[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs34162170	0.82[EUR][1000 genomes]
rs34579698	0.80[EUR][1000 genomes]
rs4582066	0.82[EUR][1000 genomes]
rs55761397	0.82[EUR][1000 genomes]
rs62251012	0.81[EUR][1000 genomes]
rs62252217	0.82[EUR][1000 genomes]
rs6764340	0.81[EUR][1000 genomes]
rs6787022	0.80[EUR][1000 genomes]
rs6802804	0.85[CHB][hapmap]
rs6805306	0.85[CHB][hapmap]
rs7611020	0.81[EUR][1000 genomes]
rs7623486	0.93[CHB][hapmap];0.85[JPT][hapmap]
rs7635551	0.80[EUR][1000 genomes]
rs7635653	0.80[EUR][1000 genomes]
rs7642834	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs7645126	0.81[EUR][1000 genomes]
rs7647683	0.81[EUR][1000 genomes]
rs930135	0.82[EUR][1000 genomes]
rs9310172	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9310173	0.80[AMR][1000 genomes];0.83[EUR][1000 genomes]
rs9310176	0.82[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs9824497	0.82[EUR][1000 genomes]
rs9824528	0.82[EUR][1000 genomes]
rs9825023	0.82[EUR][1000 genomes]
rs9825799	0.82[EUR][1000 genomes]
rs9828215	0.82[EUR][1000 genomes]
rs9828924	0.82[EUR][1000 genomes]
rs9829056	0.82[EUR][1000 genomes]
rs9830086	0.82[EUR][1000 genomes]
rs9831839	0.80[EUR][1000 genomes]
rs9836493	0.80[EUR][1000 genomes]
rs9836575	0.82[EUR][1000 genomes]
rs9838601	0.81[EUR][1000 genomes]
rs9839093	0.81[EUR][1000 genomes]
rs9839120	0.81[EUR][1000 genomes]
rs9845679	0.83[CEU][hapmap];0.80[AMR][1000 genomes];0.82[EUR][1000 genomes]
rs9849488	0.82[EUR][1000 genomes]
rs9855804	0.82[EUR][1000 genomes]
rs9855819	0.82[EUR][1000 genomes]
rs9862205	0.81[EUR][1000 genomes]
rs9862680	0.81[EUR][1000 genomes]
rs9871883	0.81[EUR][1000 genomes]
rs9876482	0.82[EUR][1000 genomes]
rs9881217	0.82[EUR][1000 genomes]
rs9881320	0.82[EUR][1000 genomes]
rs9883334	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69888800-69904400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
2	chr3:69889800-69904800	Weak transcription	Brain Angular Gyrus	brain
3	chr3:69891800-69906000	Weak transcription	Skeletal Muscle Male	skeletal muscle
4	chr3:69895000-69904800	Weak transcription	Brain Substantia Nigra	brain
5	chr3:69895200-69913600	Weak transcription	Aorta	Aorta
6	chr3:69898000-69914800	Weak transcription	Right Ventricle	heart
7	chr3:69898400-69912800	Enhancers	Fetal Heart	heart
8	chr3:69900000-69904400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:69900200-69908600	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:69900800-69904800	Weak transcription	Rectal Smooth Muscle	rectum
11	chr3:69900800-69910200	Weak transcription	Stomach Smooth Muscle	stomach
12	chr3:69903800-69905200	Enhancers	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
13	chr3:69903800-69905200	Enhancers	Right Atrium	heart
14	chr3:69903800-69906600	Enhancers	Colon Smooth Muscle	Colon
15	chr3:69904000-69904400	Enhancers	Left Ventricle	heart
16	chr3:69904000-69904800	Enhancers	A549	lung
17	chr3:69904000-69905400	Enhancers	Ovary	ovary
18	chr3:69904000-69905600	Enhancers	Brain Inferior Temporal Lobe	brain
19	chr3:69904000-69906000	Enhancers	Brain Hippocampus Middle	brain
20	chr3:69904000-69906600	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:69904000-69913000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
22	chr3:69904200-69904400	Enhancers	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:69904200-69904400	Enhancers	Psoas Muscle	Psoas
24	chr3:69904200-69904600	Weak transcription	Skeletal Muscle Female	skeletal muscle
25	chr3:69904200-69904800	Weak transcription	Duodenum Smooth Muscle	Duodenum
26	chr3:69904200-69905200	Enhancers	Fetal Adrenal Gland	Adrenal Gland
27	chr3:69904200-69906200	Enhancers	Brain Cingulate Gyrus	brain
28	chr3:69904200-69906400	Enhancers	Fetal Lung	lung
29	chr3:69904200-69908400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links