Variant report

Variant	rs1897159
Chromosome Location	chr3:69870465-69870466
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 146 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:142)

rs_ID	r²[population]
rs1036051	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1036052	0.82[ASN][1000 genomes]
rs1036053	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11708183	0.82[ASN][1000 genomes]
rs11715024	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs11716900	0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs11717837	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12107678	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs12108009	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs12714757	0.86[CEU][hapmap]
rs13066535	0.87[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs13066581	0.88[CHB][hapmap];0.80[JPT][hapmap];0.82[ASN][1000 genomes]
rs13320443	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs13320724	0.83[CHB][hapmap];0.80[JPT][hapmap]
rs13324851	0.84[ASN][1000 genomes]
rs13327273	0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs1367370	0.93[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1367371	0.82[ASN][1000 genomes]
rs1430604	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1430605	0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs1430609	0.88[CHB][hapmap]
rs1430610	0.88[CHB][hapmap]
rs1549744	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs1549745	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1549746	0.84[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17006493	0.82[ASN][1000 genomes]
rs17043851	0.86[CEU][hapmap]
rs17638538	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap]
rs1812075	0.82[ASN][1000 genomes]
rs2014255	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2082173	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs2116001	0.82[ASN][1000 genomes]
rs2163326	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap];1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2217456	0.93[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs2320171	0.93[CHB][hapmap]
rs34162170	0.82[ASN][1000 genomes]
rs34579698	0.82[ASN][1000 genomes]
rs4582066	0.88[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs4855323	0.86[CEU][hapmap]
rs55735918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55738162	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55761397	0.82[ASN][1000 genomes]
rs55808455	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55890624	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs55946371	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56007401	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56099248	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56155813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56764448	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56927902	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57317066	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57634646	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57788691	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57829272	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58529025	0.80[EUR][1000 genomes]
rs58711181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59487570	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59846970	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60438183	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61148813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62250980	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62250981	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62250982	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62251009	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62251019	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251025	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251026	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251027	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251029	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251030	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251031	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251032	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251033	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252217	0.82[ASN][1000 genomes]
rs62252218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252224	0.81[ASN][1000 genomes]
rs62252226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252229	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252230	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252232	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252233	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252234	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252237	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252238	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252239	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62252240	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253174	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253176	0.81[EUR][1000 genomes]
rs62253177	0.84[EUR][1000 genomes]
rs62253178	0.81[EUR][1000 genomes]
rs62253179	0.81[EUR][1000 genomes]
rs62253180	0.81[EUR][1000 genomes]
rs62253181	0.81[EUR][1000 genomes]
rs6764340	0.84[ASN][1000 genomes]
rs6787022	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs6797168	0.88[CHB][hapmap]
rs6800508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802804	1.00[CEU][hapmap];0.94[CHB][hapmap];0.94[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6805306	1.00[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7611020	0.88[CHB][hapmap];0.81[JPT][hapmap]
rs7623486	0.80[CHB][hapmap];0.83[EUR][1000 genomes]
rs7635551	0.81[CHB][hapmap]
rs7635653	0.81[CHB][hapmap]
rs7642834	0.82[ASN][1000 genomes]
rs7647683	0.88[CHB][hapmap];0.87[JPT][hapmap]
rs7647742	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7650137	0.82[CHB][hapmap]
rs930135	0.82[ASN][1000 genomes]
rs9310172	0.88[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs9310173	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9310176	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9824497	0.82[ASN][1000 genomes]
rs9824528	0.82[ASN][1000 genomes]
rs9825023	0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9825799	0.82[ASN][1000 genomes]
rs9828215	0.82[ASN][1000 genomes]
rs9828924	0.87[CHB][hapmap];0.87[JPT][hapmap];0.82[ASN][1000 genomes]
rs9829056	0.82[ASN][1000 genomes]
rs9829724	0.81[CHB][hapmap];0.83[JPT][hapmap]
rs9830086	0.87[CHB][hapmap];0.85[JPT][hapmap];0.82[ASN][1000 genomes]
rs9836575	0.82[ASN][1000 genomes]
rs9838601	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9839093	0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9839120	0.84[ASN][1000 genomes]
rs9845679	0.87[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9849488	0.88[CHB][hapmap];0.82[JPT][hapmap];0.82[ASN][1000 genomes]
rs9855804	0.88[CHB][hapmap];0.81[JPT][hapmap];0.82[ASN][1000 genomes]
rs9855819	0.82[ASN][1000 genomes]
rs9857999	0.83[ASN][1000 genomes]
rs9862205	0.87[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9862680	0.88[CHB][hapmap];0.82[JPT][hapmap];0.84[ASN][1000 genomes]
rs9867045	0.83[EUR][1000 genomes]
rs9871883	0.88[CHB][hapmap];0.83[JPT][hapmap];0.84[ASN][1000 genomes]
rs9876482	0.82[ASN][1000 genomes]
rs9881217	0.82[ASN][1000 genomes]
rs9881320	0.86[CHB][hapmap];0.82[ASN][1000 genomes]
rs9883334	0.87[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv963517	chr3:69851683-69877360	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:40 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69863800-69872000	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:69865600-69871400	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:69866400-69871400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
4	chr3:69866800-69871600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:69867000-69870600	Enhancers	Brain Substantia Nigra	brain
6	chr3:69867200-69871800	Enhancers	Fetal Heart	heart
7	chr3:69867400-69870600	Enhancers	Colon Smooth Muscle	Colon
8	chr3:69867400-69871400	Weak transcription	Monocytes-CD14+_RO01746	blood
9	chr3:69867600-69871400	Weak transcription	Primary monocytes fromperipheralblood	blood
10	chr3:69868200-69870800	Enhancers	Breast Myoepithelial Primary Cells	Breast
11	chr3:69868200-69870800	Enhancers	Rectal Smooth Muscle	rectum
12	chr3:69868200-69872000	Enhancers	Brain Hippocampus Middle	brain
13	chr3:69868200-69875000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:69868400-69870600	Enhancers	Fetal Muscle Leg	muscle
15	chr3:69868400-69870600	Enhancers	Right Ventricle	heart
16	chr3:69868400-69870800	Enhancers	Stomach Smooth Muscle	stomach
17	chr3:69868400-69871600	Enhancers	Brain Anterior Caudate	brain
18	chr3:69868400-69871600	Enhancers	Left Ventricle	heart
19	chr3:69868600-69870800	Enhancers	Brain Cingulate Gyrus	brain
20	chr3:69868600-69871200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:69868600-69871400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
22	chr3:69869000-69879000	Weak transcription	Right Atrium	heart
23	chr3:69869200-69871000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
24	chr3:69869200-69879400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
25	chr3:69869200-69879400	Weak transcription	Pancreas	Pancrea
26	chr3:69869800-69870600	Enhancers	H1 Derived Neuronal Progenitor Cultured Cells	ES cell derived
27	chr3:69869800-69870600	Enhancers	NH-A	brain
28	chr3:69869800-69871600	Enhancers	Psoas Muscle	Psoas
29	chr3:69870000-69871200	Weak transcription	Adipose Nuclei	Adipose
30	chr3:69870000-69871600	Enhancers	Cortex derived primary cultured neurospheres	brain
31	chr3:69870000-69872000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
32	chr3:69870000-69873600	Weak transcription	Ovary	ovary
33	chr3:69870200-69870600	Enhancers	Ganglion Eminence derived primary cultured neurospheres	brain
34	chr3:69870200-69870800	Enhancers	H9 Derived Neuron Cultured Cells	ES cell derived
35	chr3:69870200-69870800	Enhancers	HSMM	muscle
36	chr3:69870200-69871600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
37	chr3:69870200-69871800	Enhancers	Duodenum Smooth Muscle	Duodenum
38	chr3:69870200-69886000	Weak transcription	Aorta	Aorta
39	chr3:69870400-69871200	Enhancers	Brain Inferior Temporal Lobe	brain
40	chr3:69870400-69871400	Weak transcription	NHLF	lung

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