Variant report

Variant	rs17043851
Chromosome Location	chr3:69825970-69825971
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 37 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:34)

rs_ID	r²[population]
rs11128143	0.91[CHB][hapmap];0.81[JPT][hapmap];0.81[ASN][1000 genomes]
rs12714757	1.00[CEU][hapmap];0.95[CHB][hapmap];0.93[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];0.94[TSI][hapmap];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs13314892	0.87[CEU][hapmap]
rs13318796	0.87[CEU][hapmap]
rs1367369	0.89[CHB][hapmap];0.85[JPT][hapmap];0.80[ASN][1000 genomes]
rs1430604	0.86[CEU][hapmap];0.88[GIH][hapmap]
rs1549746	0.83[CEU][hapmap]
rs17006419	0.91[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs17638538	0.86[CEU][hapmap]
rs1897159	0.86[CEU][hapmap]
rs2114660	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs2163326	0.86[CEU][hapmap];0.91[GIH][hapmap]
rs28378222	0.80[ASN][1000 genomes]
rs28613540	0.80[ASN][1000 genomes]
rs4855323	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs4855447	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs4855448	0.81[ASN][1000 genomes]
rs55947901	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56286049	0.84[AFR][1000 genomes];0.97[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs56386221	0.80[EUR][1000 genomes]
rs57537586	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58244283	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58529025	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60551165	0.95[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62250970	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62250976	0.97[AMR][1000 genomes];0.95[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62250977	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62250978	0.95[EUR][1000 genomes]
rs6772383	0.80[EUR][1000 genomes]
rs6786207	0.82[CHB][hapmap]
rs6802804	0.86[CEU][hapmap];0.88[GIH][hapmap]
rs6805306	0.86[CEU][hapmap]
rs7648607	0.85[CHB][hapmap];0.82[JPT][hapmap];0.80[ASN][1000 genomes]
rs9834743	0.81[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69814400-69834000	Weak transcription	Right Ventricle	heart
2	chr3:69819400-69827200	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:69820800-69826000	Weak transcription	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
4	chr3:69821200-69834000	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
5	chr3:69821800-69826400	Enhancers	K562	blood
6	chr3:69821800-69826800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:69822400-69830800	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:69822400-69834400	Weak transcription	Gastric	stomach
9	chr3:69823400-69827400	Enhancers	Fetal Heart	heart
10	chr3:69823400-69830000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
11	chr3:69823600-69833600	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
12	chr3:69824000-69827000	Weak transcription	Brain Anterior Caudate	brain
13	chr3:69824000-69834000	Weak transcription	Right Atrium	heart
14	chr3:69824000-69834400	Weak transcription	Brain Angular Gyrus	brain
15	chr3:69824000-69837000	Weak transcription	Lung	lung
16	chr3:69824200-69826600	Weak transcription	Psoas Muscle	Psoas
17	chr3:69824200-69829000	Weak transcription	Left Ventricle	heart
18	chr3:69824400-69826400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
19	chr3:69824400-69826800	Weak transcription	Ovary	ovary
20	chr3:69824600-69826600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
21	chr3:69824600-69830800	Weak transcription	Skeletal Muscle Male	skeletal muscle
22	chr3:69824600-69834400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
23	chr3:69824800-69827200	Enhancers	Colon Smooth Muscle	Colon
24	chr3:69825200-69826600	Enhancers	Monocytes-CD14+_RO01746	blood
25	chr3:69825200-69827400	Enhancers	Primary monocytes fromperipheralblood	blood
26	chr3:69825400-69826600	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
27	chr3:69825400-69826600	Weak transcription	Brain Cingulate Gyrus	brain
28	chr3:69825400-69826800	Enhancers	NHLF	lung
29	chr3:69825400-69827800	Enhancers	Adipose Nuclei	Adipose
30	chr3:69825400-69829600	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
31	chr3:69825600-69826800	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:69825600-69826800	Weak transcription	Brain Substantia Nigra	brain
33	chr3:69825600-69827000	Enhancers	HUVEC	blood vessel
34	chr3:69825600-69827000	Enhancers	NHDF-Ad	bronchial
35	chr3:69825800-69826400	Enhancers	Osteobl	bone
36	chr3:69825800-69827000	Enhancers	Muscle Satellite Cultured Cells	--
37	chr3:69825800-69833200	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
38	chr3:69825800-69833200	Weak transcription	Rectal Smooth Muscle	rectum
39	chr3:69825800-69834000	Weak transcription	Aorta	Aorta

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