Variant report

Variant	rs58529025
Chromosome Location	chr3:69843262-69843263
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 56 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:53)

rs_ID	r²[population]
rs12714757	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs1430604	0.80[EUR][1000 genomes]
rs1549745	0.80[EUR][1000 genomes]
rs17006419	0.96[AMR][1000 genomes];0.95[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs17043851	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1897159	0.80[EUR][1000 genomes]
rs2114660	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4855323	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs4855447	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs55735918	0.80[EUR][1000 genomes]
rs55808455	0.80[EUR][1000 genomes]
rs55946371	0.80[EUR][1000 genomes]
rs55947901	0.95[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56007401	0.80[EUR][1000 genomes]
rs56286049	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs56386221	0.84[AMR][1000 genomes]
rs56764448	0.80[EUR][1000 genomes]
rs56927902	0.81[EUR][1000 genomes]
rs57078287	0.84[AMR][1000 genomes]
rs57317066	0.80[EUR][1000 genomes]
rs57537586	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57634646	0.80[EUR][1000 genomes]
rs57829272	0.81[EUR][1000 genomes]
rs58244283	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs59487570	0.80[EUR][1000 genomes]
rs59846970	0.80[EUR][1000 genomes]
rs60551165	0.97[AFR][1000 genomes];1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs60843510	0.84[AMR][1000 genomes]
rs61148813	0.80[EUR][1000 genomes]
rs62250970	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62250976	0.92[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62250977	1.00[AMR][1000 genomes];0.96[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62250978	0.97[AFR][1000 genomes];0.96[EUR][1000 genomes]
rs62250980	0.82[EUR][1000 genomes]
rs62250981	0.82[EUR][1000 genomes]
rs62250982	0.82[EUR][1000 genomes]
rs62251009	0.80[EUR][1000 genomes]
rs62251025	0.81[EUR][1000 genomes]
rs62251026	0.81[EUR][1000 genomes]
rs62251027	0.81[EUR][1000 genomes]
rs62251029	0.81[EUR][1000 genomes]
rs62251030	0.81[EUR][1000 genomes]
rs62251031	0.81[EUR][1000 genomes]
rs62251032	0.81[EUR][1000 genomes]
rs62251033	0.81[EUR][1000 genomes]
rs62251040	0.81[EUR][1000 genomes]
rs62252174	0.80[EUR][1000 genomes]
rs62252239	0.80[EUR][1000 genomes]
rs6772383	0.84[AMR][1000 genomes]
rs6785461	0.87[ASN][1000 genomes]
rs6800508	0.80[EUR][1000 genomes]
rs6802804	0.81[EUR][1000 genomes]
rs6805306	0.81[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69836400-69844800	Weak transcription	H1 BMP4 Derived Mesendoderm Cultured Cells	ES cell derived
2	chr3:69841000-69845200	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
3	chr3:69841200-69847200	Weak transcription	Right Ventricle	heart
4	chr3:69841200-69856200	Weak transcription	Ovary	ovary
5	chr3:69841200-69857600	Weak transcription	Right Atrium	heart
6	chr3:69841400-69843600	Enhancers	Fetal Heart	heart
7	chr3:69841400-69846000	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
8	chr3:69841400-69846800	Weak transcription	Aorta	Aorta
9	chr3:69841400-69847200	Weak transcription	Psoas Muscle	Psoas
10	chr3:69841400-69848600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
11	chr3:69841400-69853200	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:69841400-69855800	Weak transcription	HSMM	muscle
13	chr3:69841600-69853400	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:69841800-69855400	Weak transcription	NHLF	lung
15	chr3:69842000-69843400	Enhancers	Left Ventricle	heart
16	chr3:69842000-69846800	Weak transcription	HUVEC	blood vessel
17	chr3:69842200-69853000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
18	chr3:69842400-69844000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
19	chr3:69842400-69848200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
20	chr3:69842600-69844000	Enhancers	Skeletal Muscle Female	skeletal muscle
21	chr3:69843000-69844200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:69843000-69850600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--
23	chr3:69843200-69848200	Weak transcription	K562	blood

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