Variant report

Variant	rs55946371
Chromosome Location	chr3:69871412-69871413
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:125)

rs_ID	r²[population]
rs1036051	0.82[ASN][1000 genomes]
rs1036052	0.82[ASN][1000 genomes]
rs1036053	0.82[ASN][1000 genomes]
rs11708183	0.82[ASN][1000 genomes]
rs11715024	0.82[ASN][1000 genomes]
rs11716900	0.84[ASN][1000 genomes]
rs11717837	0.82[ASN][1000 genomes]
rs12108009	0.82[ASN][1000 genomes]
rs13066535	0.82[ASN][1000 genomes]
rs13066581	0.82[ASN][1000 genomes]
rs13320443	0.84[ASN][1000 genomes]
rs13324851	0.84[ASN][1000 genomes]
rs13327273	0.84[ASN][1000 genomes]
rs1367370	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1367371	0.82[ASN][1000 genomes]
rs1430604	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs1430605	0.82[ASN][1000 genomes]
rs1549744	0.82[ASN][1000 genomes]
rs1549745	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs1549746	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs17006493	0.82[ASN][1000 genomes]
rs1812075	0.82[ASN][1000 genomes]
rs1897159	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2014255	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2082173	0.82[ASN][1000 genomes]
rs2116001	0.82[ASN][1000 genomes]
rs2163326	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2217456	0.82[ASN][1000 genomes]
rs34162170	0.82[ASN][1000 genomes]
rs34579698	0.82[ASN][1000 genomes]
rs4582066	0.81[ASN][1000 genomes]
rs55735918	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs55738162	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs55761397	0.82[ASN][1000 genomes]
rs55808455	0.83[AFR][1000 genomes];0.92[AMR][1000 genomes];1.00[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55890624	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56007401	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56099248	0.80[AMR][1000 genomes];0.91[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56155813	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56764448	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs56927902	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs57317066	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57634646	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57788691	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs57829272	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs58529025	0.80[EUR][1000 genomes]
rs58711181	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs59487570	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs59846970	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs60438183	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs61148813	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62250980	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62250981	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62250982	0.82[AFR][1000 genomes];0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62251009	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62251019	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251025	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251026	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251027	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251029	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62251030	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251031	0.92[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251032	0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251033	0.94[AMR][1000 genomes];0.99[EUR][1000 genomes];0.96[ASN][1000 genomes]
rs62251040	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252174	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252182	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252217	0.82[ASN][1000 genomes]
rs62252218	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252219	0.91[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252224	0.81[ASN][1000 genomes]
rs62252226	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252228	0.95[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252229	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252230	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252232	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252233	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252234	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252237	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252238	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252239	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs62252240	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253174	0.92[AMR][1000 genomes];0.94[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62253176	0.81[EUR][1000 genomes]
rs62253177	0.84[EUR][1000 genomes]
rs62253178	0.81[EUR][1000 genomes]
rs62253179	0.81[EUR][1000 genomes]
rs62253180	0.81[EUR][1000 genomes]
rs62253181	0.81[EUR][1000 genomes]
rs6764340	0.84[ASN][1000 genomes]
rs6800508	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs6802804	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs6805306	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs7623486	0.83[EUR][1000 genomes]
rs7642834	0.82[ASN][1000 genomes]
rs7647742	0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs930135	0.82[ASN][1000 genomes]
rs9310172	0.82[ASN][1000 genomes]
rs9310173	0.82[ASN][1000 genomes]
rs9310176	0.82[ASN][1000 genomes]
rs9824497	0.82[ASN][1000 genomes]
rs9824528	0.82[ASN][1000 genomes]
rs9825023	0.82[ASN][1000 genomes]
rs9825799	0.82[ASN][1000 genomes]
rs9828215	0.82[ASN][1000 genomes]
rs9828924	0.82[ASN][1000 genomes]
rs9829056	0.82[ASN][1000 genomes]
rs9830086	0.82[ASN][1000 genomes]
rs9836575	0.82[ASN][1000 genomes]
rs9838601	0.84[ASN][1000 genomes]
rs9839093	0.84[ASN][1000 genomes]
rs9839120	0.84[ASN][1000 genomes]
rs9845679	0.82[ASN][1000 genomes]
rs9849488	0.82[ASN][1000 genomes]
rs9855804	0.82[ASN][1000 genomes]
rs9855819	0.82[ASN][1000 genomes]
rs9857999	0.83[ASN][1000 genomes]
rs9862205	0.84[ASN][1000 genomes]
rs9862680	0.84[ASN][1000 genomes]
rs9867045	0.83[EUR][1000 genomes]
rs9871883	0.84[ASN][1000 genomes]
rs9876482	0.82[ASN][1000 genomes]
rs9881217	0.82[ASN][1000 genomes]
rs9881320	0.82[ASN][1000 genomes]
rs9883334	0.82[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv963517	chr3:69851683-69877360	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:38 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69863800-69872000	Enhancers	Skeletal Muscle Male	skeletal muscle
2	chr3:69866800-69871600	Enhancers	Skeletal Muscle Female	skeletal muscle
3	chr3:69867200-69871800	Enhancers	Fetal Heart	heart
4	chr3:69868200-69872000	Enhancers	Brain Hippocampus Middle	brain
5	chr3:69868200-69875000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:69868400-69871600	Enhancers	Brain Anterior Caudate	brain
7	chr3:69868400-69871600	Enhancers	Left Ventricle	heart
8	chr3:69869000-69879000	Weak transcription	Right Atrium	heart
9	chr3:69869200-69879400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
10	chr3:69869200-69879400	Weak transcription	Pancreas	Pancrea
11	chr3:69869800-69871600	Enhancers	Psoas Muscle	Psoas
12	chr3:69870000-69871600	Enhancers	Cortex derived primary cultured neurospheres	brain
13	chr3:69870000-69872000	Enhancers	Mesenchymal Stem Cell Derived Chondrocyte Cultured Cells	embryonic stem cell
14	chr3:69870000-69873600	Weak transcription	Ovary	ovary
15	chr3:69870200-69871600	Enhancers	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
16	chr3:69870200-69871800	Enhancers	Duodenum Smooth Muscle	Duodenum
17	chr3:69870200-69886000	Weak transcription	Aorta	Aorta
18	chr3:69870600-69873400	Weak transcription	Brain Substantia Nigra	brain
19	chr3:69870600-69873600	Weak transcription	Right Ventricle	heart
20	chr3:69870600-69886200	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:69870800-69873200	Weak transcription	HSMM	muscle
22	chr3:69870800-69873400	Weak transcription	Brain Cingulate Gyrus	brain
23	chr3:69870800-69878800	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:69871000-69871600	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
25	chr3:69871200-69871800	Enhancers	NH-A	brain
26	chr3:69871200-69872400	Enhancers	Adipose Nuclei	Adipose
27	chr3:69871200-69873400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
28	chr3:69871200-69873800	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:69871400-69871600	Enhancers	Rectal Smooth Muscle	rectum
30	chr3:69871400-69871600	Enhancers	HSMMtube	muscle
31	chr3:69871400-69871800	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
32	chr3:69871400-69871800	Enhancers	Bone Marrow Derived Cultured Mesenchymal Stem Cells	Bone marrow
33	chr3:69871400-69871800	Enhancers	Muscle Satellite Cultured Cells	--
34	chr3:69871400-69872000	Enhancers	Primary monocytes fromperipheralblood	blood
35	chr3:69871400-69872000	Enhancers	Monocytes-CD14+_RO01746	blood
36	chr3:69871400-69872200	Enhancers	Primary hematopoietic stem cells G-CSF-mobilized Female	--
37	chr3:69871400-69872400	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
38	chr3:69871400-69873800	Enhancers	NHLF	lung

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