Variant report

Variant	rs57788691
Chromosome Location	chr3:69897450-69897451
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69895768..69898041-chr3:69901169..69902782,2	K562	blood:
2	chr3:69891583..69893320-chr3:69895676..69898629,2	MCF-7	breast:

Extended variants
information (count: 131 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:129)

rs_ID	r²[population]
rs1036051	0.83[ASN][1000 genomes]
rs1036052	0.83[ASN][1000 genomes]
rs1036053	0.83[ASN][1000 genomes]
rs11708183	0.83[ASN][1000 genomes]
rs11715024	0.83[ASN][1000 genomes]
rs11716900	0.81[ASN][1000 genomes]
rs11717837	0.83[ASN][1000 genomes]
rs12108009	0.83[ASN][1000 genomes]
rs13066535	0.83[ASN][1000 genomes]
rs13066581	0.83[ASN][1000 genomes]
rs13071707	0.81[ASN][1000 genomes]
rs13320443	0.81[ASN][1000 genomes]
rs13324851	0.81[ASN][1000 genomes]
rs13327273	0.81[ASN][1000 genomes]
rs1367370	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1367371	0.83[ASN][1000 genomes]
rs1430604	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs1430605	0.83[ASN][1000 genomes]
rs1549744	0.83[ASN][1000 genomes]
rs1549745	0.90[AMR][1000 genomes];0.95[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1549746	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs17006493	0.83[ASN][1000 genomes]
rs1812075	0.83[ASN][1000 genomes]
rs1897159	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs2014255	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2082173	0.83[ASN][1000 genomes]
rs2116001	0.83[ASN][1000 genomes]
rs2163326	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2163327	0.81[ASN][1000 genomes]
rs2217456	0.83[ASN][1000 genomes]
rs2874181	0.81[ASN][1000 genomes]
rs34162170	0.83[ASN][1000 genomes]
rs34579698	0.83[ASN][1000 genomes]
rs4582066	0.82[ASN][1000 genomes]
rs55735918	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs55738162	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs55761397	0.83[ASN][1000 genomes]
rs55808455	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs55890624	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55946371	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs56007401	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56099248	0.87[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs56155813	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs56764448	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs56927902	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs57317066	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57634646	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs57829272	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs58711181	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs59487570	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs59846970	0.87[AMR][1000 genomes];0.97[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs60438183	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs61148813	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62250980	0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62250981	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62250982	0.90[AMR][1000 genomes];0.94[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62251009	0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62251019	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs62251025	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62251026	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62251027	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62251029	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs62251030	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251031	0.81[AFR][1000 genomes];0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251032	0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251033	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251040	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62252174	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252182	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252217	0.83[ASN][1000 genomes]
rs62252218	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252219	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252224	0.82[ASN][1000 genomes]
rs62252226	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252228	0.81[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252229	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252230	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252232	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252233	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252234	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252237	1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252238	1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252239	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.97[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252240	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253174	0.85[AFR][1000 genomes];0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62253176	0.82[EUR][1000 genomes]
rs62253177	0.86[EUR][1000 genomes]
rs62253178	0.82[EUR][1000 genomes]
rs62253179	0.82[EUR][1000 genomes]
rs62253180	0.82[EUR][1000 genomes]
rs62253181	0.82[EUR][1000 genomes]
rs62253183	0.81[EUR][1000 genomes]
rs62253185	0.81[EUR][1000 genomes]
rs6764340	0.81[ASN][1000 genomes]
rs6800508	0.96[AMR][1000 genomes];0.97[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs6802804	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs6805306	0.87[AMR][1000 genomes];0.96[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7623486	0.84[EUR][1000 genomes]
rs7642834	0.83[ASN][1000 genomes]
rs7647742	0.81[AFR][1000 genomes];0.92[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs930135	0.83[ASN][1000 genomes]
rs9310172	0.83[ASN][1000 genomes]
rs9310173	0.83[ASN][1000 genomes]
rs9310176	0.83[ASN][1000 genomes]
rs9824497	0.83[ASN][1000 genomes]
rs9824528	0.83[ASN][1000 genomes]
rs9825023	0.83[ASN][1000 genomes]
rs9825799	0.83[ASN][1000 genomes]
rs9828215	0.83[ASN][1000 genomes]
rs9828924	0.83[ASN][1000 genomes]
rs9829056	0.83[ASN][1000 genomes]
rs9830086	0.83[ASN][1000 genomes]
rs9836575	0.83[ASN][1000 genomes]
rs9838601	0.81[ASN][1000 genomes]
rs9839093	0.81[ASN][1000 genomes]
rs9839120	0.81[ASN][1000 genomes]
rs9845679	0.83[ASN][1000 genomes]
rs9849488	0.83[ASN][1000 genomes]
rs9855804	0.83[ASN][1000 genomes]
rs9855819	0.83[ASN][1000 genomes]
rs9857999	0.80[ASN][1000 genomes]
rs9862205	0.81[ASN][1000 genomes]
rs9862680	0.81[ASN][1000 genomes]
rs9867045	0.84[EUR][1000 genomes]
rs9871883	0.81[ASN][1000 genomes]
rs9876482	0.83[ASN][1000 genomes]
rs9881217	0.83[ASN][1000 genomes]
rs9881320	0.83[ASN][1000 genomes]
rs9883334	0.83[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69888200-69900000	Weak transcription	Stomach Smooth Muscle	stomach
2	chr3:69888400-69904000	Weak transcription	A549	lung
3	chr3:69888800-69904400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
4	chr3:69889800-69904800	Weak transcription	Brain Angular Gyrus	brain
5	chr3:69890200-69898400	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
6	chr3:69891800-69906000	Weak transcription	Skeletal Muscle Male	skeletal muscle
7	chr3:69892200-69898400	Weak transcription	Esophagus	oesophagus
8	chr3:69895000-69904000	Weak transcription	Brain Hippocampus Middle	brain
9	chr3:69895000-69904800	Weak transcription	Brain Substantia Nigra	brain
10	chr3:69895200-69903800	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
11	chr3:69895200-69913600	Weak transcription	Aorta	Aorta
12	chr3:69895400-69897600	Enhancers	Colon Smooth Muscle	Colon
13	chr3:69895600-69899800	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:69896600-69898000	Enhancers	Fetal Heart	heart
15	chr3:69896600-69899800	Weak transcription	Psoas Muscle	Psoas
16	chr3:69896800-69897800	Enhancers	Ovary	ovary
17	chr3:69897200-69897800	Enhancers	Brain Cingulate Gyrus	brain
18	chr3:69897200-69898600	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:69897200-69899000	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:69897400-69897800	Enhancers	Duodenum Smooth Muscle	Duodenum
21	chr3:69897400-69898000	Enhancers	Right Ventricle	heart
22	chr3:69897400-69898600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
23	chr3:69897400-69900000	Enhancers	Adipose Nuclei	Adipose

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