Variant report

Variant	rs62252230
Chromosome Location	chr3:69888682-69888683
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 129 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:127)

rs_ID	r²[population]
rs1036051	0.84[ASN][1000 genomes]
rs1036052	0.84[ASN][1000 genomes]
rs1036053	0.84[ASN][1000 genomes]
rs11708183	0.84[ASN][1000 genomes]
rs11715024	0.84[ASN][1000 genomes]
rs11716900	0.82[ASN][1000 genomes]
rs11717837	0.84[ASN][1000 genomes]
rs12108009	0.84[ASN][1000 genomes]
rs13066535	0.84[ASN][1000 genomes]
rs13066581	0.84[ASN][1000 genomes]
rs13071707	0.82[ASN][1000 genomes]
rs13320443	0.82[ASN][1000 genomes]
rs13324851	0.82[ASN][1000 genomes]
rs13327273	0.82[ASN][1000 genomes]
rs1367370	0.93[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1367371	0.84[ASN][1000 genomes]
rs1430604	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs1430605	0.84[ASN][1000 genomes]
rs1549744	0.84[ASN][1000 genomes]
rs1549745	0.88[AMR][1000 genomes];0.97[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs1549746	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs17006493	0.84[ASN][1000 genomes]
rs1812075	0.84[ASN][1000 genomes]
rs1897159	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs2014255	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs2082173	0.84[ASN][1000 genomes]
rs2116001	0.84[ASN][1000 genomes]
rs2163326	0.88[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs2163327	0.82[ASN][1000 genomes]
rs2217456	0.84[ASN][1000 genomes]
rs2874181	0.82[ASN][1000 genomes]
rs34162170	0.84[ASN][1000 genomes]
rs34579698	0.84[ASN][1000 genomes]
rs4582066	0.83[ASN][1000 genomes]
rs55735918	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55738162	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs55761397	0.84[ASN][1000 genomes]
rs55808455	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs55890624	0.88[AMR][1000 genomes];0.98[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55946371	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs56007401	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56099248	0.89[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs56155813	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs56764448	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56927902	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs57317066	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57634646	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57788691	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs57829272	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs58711181	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs59487570	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59846970	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60438183	0.91[AFR][1000 genomes];0.96[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs61148813	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62250980	0.81[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62250981	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62250982	0.84[AMR][1000 genomes];0.96[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62251009	0.86[AMR][1000 genomes];0.97[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs62251019	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62251025	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251026	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251027	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251029	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs62251030	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62251031	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62251032	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62251033	0.96[AMR][1000 genomes];0.98[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs62251040	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252174	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs62252182	0.90[AMR][1000 genomes];0.99[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252217	0.84[ASN][1000 genomes]
rs62252218	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252219	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252224	0.83[ASN][1000 genomes]
rs62252226	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252228	0.90[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252229	0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];1.00[ASN][1000 genomes]
rs62252232	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252233	1.00[AFR][1000 genomes];0.98[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252234	1.00[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252237	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252238	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62252239	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62252240	0.94[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62253174	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62253176	0.81[EUR][1000 genomes]
rs62253177	0.84[EUR][1000 genomes]
rs62253178	0.81[EUR][1000 genomes]
rs62253179	0.81[EUR][1000 genomes]
rs62253180	0.81[EUR][1000 genomes]
rs62253181	0.81[EUR][1000 genomes]
rs6764340	0.82[ASN][1000 genomes]
rs6800508	0.90[AMR][1000 genomes];0.98[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs6802804	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs6805306	0.92[AMR][1000 genomes];0.98[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs7623486	0.83[EUR][1000 genomes]
rs7642834	0.84[ASN][1000 genomes]
rs7647742	0.86[AMR][1000 genomes];0.98[EUR][1000 genomes];0.89[ASN][1000 genomes]
rs930135	0.84[ASN][1000 genomes]
rs9310172	0.84[ASN][1000 genomes]
rs9310173	0.84[ASN][1000 genomes]
rs9310176	0.84[ASN][1000 genomes]
rs9824497	0.84[ASN][1000 genomes]
rs9824528	0.84[ASN][1000 genomes]
rs9825023	0.84[ASN][1000 genomes]
rs9825799	0.84[ASN][1000 genomes]
rs9828215	0.84[ASN][1000 genomes]
rs9828924	0.84[ASN][1000 genomes]
rs9829056	0.84[ASN][1000 genomes]
rs9830086	0.84[ASN][1000 genomes]
rs9836575	0.84[ASN][1000 genomes]
rs9838601	0.82[ASN][1000 genomes]
rs9839093	0.82[ASN][1000 genomes]
rs9839120	0.82[ASN][1000 genomes]
rs9845679	0.84[ASN][1000 genomes]
rs9849488	0.84[ASN][1000 genomes]
rs9855804	0.84[ASN][1000 genomes]
rs9855819	0.84[ASN][1000 genomes]
rs9857999	0.81[ASN][1000 genomes]
rs9862205	0.82[ASN][1000 genomes]
rs9862680	0.82[ASN][1000 genomes]
rs9867045	0.83[EUR][1000 genomes]
rs9871883	0.82[ASN][1000 genomes]
rs9876482	0.84[ASN][1000 genomes]
rs9881217	0.84[ASN][1000 genomes]
rs9881320	0.84[ASN][1000 genomes]
rs9883334	0.84[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:30 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69886000-69889000	Enhancers	Psoas Muscle	Psoas
2	chr3:69886000-69889400	Enhancers	Fetal Heart	heart
3	chr3:69886400-69889800	Enhancers	Brain Hippocampus Middle	brain
4	chr3:69886400-69890000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
5	chr3:69886400-69891800	Weak transcription	Aorta	Aorta
6	chr3:69886600-69889400	Weak transcription	Right Ventricle	heart
7	chr3:69887000-69889400	Weak transcription	Brain Angular Gyrus	brain
8	chr3:69887000-69889400	Enhancers	NHDF-Ad	bronchial
9	chr3:69887400-69888800	Enhancers	Left Ventricle	heart
10	chr3:69887600-69889400	Enhancers	Ovary	ovary
11	chr3:69887600-69889600	Enhancers	Brain Substantia Nigra	brain
12	chr3:69887800-69888800	Enhancers	Right Atrium	heart
13	chr3:69887800-69889800	Enhancers	Brain Inferior Temporal Lobe	brain
14	chr3:69887800-69890200	Enhancers	Brain Cingulate Gyrus	brain
15	chr3:69888000-69889400	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
16	chr3:69888000-69889600	Enhancers	Brain Anterior Caudate	brain
17	chr3:69888200-69888800	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:69888200-69889200	Weak transcription	Skeletal Muscle Male	skeletal muscle
19	chr3:69888200-69889400	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
20	chr3:69888200-69890200	Weak transcription	Duodenum Smooth Muscle	Duodenum
21	chr3:69888200-69890200	Weak transcription	Fetal Lung	lung
22	chr3:69888200-69891400	Weak transcription	Skeletal Muscle Female	skeletal muscle
23	chr3:69888200-69900000	Weak transcription	Stomach Smooth Muscle	stomach
24	chr3:69888400-69888800	Enhancers	NHLF	lung
25	chr3:69888400-69889200	Active TSS	Foreskin Melanocyte Primary Cells skin03	Skin
26	chr3:69888400-69891600	Weak transcription	Colon Smooth Muscle	Colon
27	chr3:69888400-69904000	Weak transcription	A549	lung
28	chr3:69888600-69888800	Flanking Active TSS	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:69888600-69889600	Enhancers	Fetal Thymus	thymus
30	chr3:69888600-69890600	Weak transcription	Rectal Smooth Muscle	rectum

The 2.0 version of rSNPBase

Variant report

Quick Search:

what's new

Quick links