Variant report

Variant	rs1549746
Chromosome Location	chr3:69851350-69851351
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 126 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:123)

rs_ID	r²[population]
rs1036051	0.82[JPT][hapmap]
rs1036053	0.82[JPT][hapmap]
rs11715024	0.82[JPT][hapmap]
rs11716900	0.82[JPT][hapmap]
rs11717837	0.82[JPT][hapmap]
rs11918650	0.82[ASN][1000 genomes]
rs12107678	0.83[JPT][hapmap]
rs12108009	0.82[JPT][hapmap]
rs12714757	0.83[CEU][hapmap]
rs13066535	0.80[JPT][hapmap]
rs13066581	0.80[JPT][hapmap]
rs13320443	0.83[JPT][hapmap]
rs13320724	0.80[JPT][hapmap]
rs13327273	0.83[JPT][hapmap]
rs1367370	0.80[CHB][hapmap];1.00[JPT][hapmap];0.91[YRI][hapmap];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1430604	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs1430605	0.83[JPT][hapmap]
rs1430609	0.82[CHB][hapmap]
rs1430610	0.82[CHB][hapmap]
rs1549744	0.82[JPT][hapmap]
rs1549745	0.84[AMR][1000 genomes];0.90[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs17043851	0.83[CEU][hapmap]
rs17638538	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap]
rs1897159	0.84[CEU][hapmap];0.81[CHB][hapmap];1.00[JPT][hapmap];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2014255	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs2082173	0.82[JPT][hapmap]
rs2163326	0.83[CEU][hapmap];0.80[CHB][hapmap];1.00[JPT][hapmap];0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs2217456	0.81[JPT][hapmap]
rs4582066	0.81[JPT][hapmap]
rs4855323	0.83[CEU][hapmap]
rs4855447	0.81[CEU][hapmap]
rs55735918	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55738162	0.82[AMR][1000 genomes];0.89[EUR][1000 genomes];0.93[ASN][1000 genomes]
rs55808455	0.90[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs55890624	0.84[AMR][1000 genomes];0.89[EUR][1000 genomes];0.94[ASN][1000 genomes]
rs55946371	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56007401	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56099248	0.98[AMR][1000 genomes];0.97[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs56155813	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs56764448	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs56927902	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs57317066	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57634646	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs57788691	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs57829272	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs58711181	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs59487570	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs59846970	0.90[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs60438183	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs61148813	0.90[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62250978	0.80[ASN][1000 genomes]
rs62250980	0.80[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62250981	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62250982	0.83[AMR][1000 genomes];0.89[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62251009	0.90[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs62251019	0.89[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62251025	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62251026	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62251027	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62251029	0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62251030	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62251031	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62251032	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62251033	0.91[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62251040	0.91[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62252174	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62252182	0.89[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62252218	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62252219	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62252226	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62252228	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62252229	0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62252230	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62252232	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62252233	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62252234	0.82[AFR][1000 genomes];0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62252237	0.87[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62252238	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62252239	0.90[EUR][1000 genomes]
rs62252240	0.88[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62253174	0.84[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs62253176	0.88[EUR][1000 genomes]
rs62253177	0.93[EUR][1000 genomes]
rs62253178	0.88[EUR][1000 genomes]
rs62253179	0.88[EUR][1000 genomes]
rs62253180	0.88[EUR][1000 genomes]
rs62253181	0.88[EUR][1000 genomes]
rs62253182	0.86[EUR][1000 genomes]
rs62253183	0.88[EUR][1000 genomes]
rs62253185	0.88[EUR][1000 genomes]
rs6785975	0.82[CHB][hapmap]
rs6787022	0.88[CHB][hapmap];0.83[JPT][hapmap]
rs6797168	0.82[CHB][hapmap]
rs6800508	0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6802804	0.83[CEU][hapmap];0.87[CHB][hapmap];0.94[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs6805306	0.84[CEU][hapmap];0.93[CHB][hapmap];0.87[JPT][hapmap];0.91[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs7611020	0.82[CHB][hapmap];0.81[JPT][hapmap];0.80[ASN][1000 genomes]
rs7623486	0.80[CEU][hapmap];0.91[EUR][1000 genomes]
rs7635551	0.88[CHB][hapmap]
rs7635653	0.87[CHB][hapmap]
rs7645126	0.80[ASN][1000 genomes]
rs7647683	0.82[CHB][hapmap];0.87[JPT][hapmap]
rs7647742	0.89[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs7650137	0.82[CHB][hapmap]
rs9310172	0.81[JPT][hapmap]
rs9310173	0.82[JPT][hapmap]
rs9310176	0.82[JPT][hapmap]
rs9825023	0.83[JPT][hapmap]
rs9828924	0.87[JPT][hapmap]
rs9829724	0.88[CHB][hapmap];0.83[JPT][hapmap];0.82[ASN][1000 genomes]
rs9830086	0.85[JPT][hapmap]
rs9831839	0.82[ASN][1000 genomes]
rs9838601	0.83[JPT][hapmap]
rs9839093	0.83[JPT][hapmap]
rs9845679	0.82[JPT][hapmap]
rs9849488	0.82[JPT][hapmap]
rs9855804	0.81[JPT][hapmap]
rs9862205	0.83[JPT][hapmap]
rs9862680	0.82[JPT][hapmap]
rs9867045	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs9871883	0.83[JPT][hapmap]
rs9881320	0.80[CHB][hapmap]
rs9883334	0.83[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:22 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69841200-69856200	Weak transcription	Ovary	ovary
2	chr3:69841200-69857600	Weak transcription	Right Atrium	heart
3	chr3:69841400-69853200	Weak transcription	Colon Smooth Muscle	Colon
4	chr3:69841400-69855800	Weak transcription	HSMM	muscle
5	chr3:69841600-69853400	Weak transcription	Rectal Smooth Muscle	rectum
6	chr3:69841800-69855400	Weak transcription	NHLF	lung
7	chr3:69842200-69853000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
8	chr3:69843400-69859800	Weak transcription	Left Ventricle	heart
9	chr3:69844000-69856000	Weak transcription	Skeletal Muscle Female	skeletal muscle
10	chr3:69847400-69860600	Weak transcription	Aorta	Aorta
11	chr3:69848000-69857600	Weak transcription	Psoas Muscle	Psoas
12	chr3:69848800-69853000	Weak transcription	Primary monocytes fromperipheralblood	blood
13	chr3:69848800-69853800	Weak transcription	K562	blood
14	chr3:69848800-69858600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
15	chr3:69849200-69852400	Weak transcription	HUVEC	blood vessel
16	chr3:69849600-69851400	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
17	chr3:69849800-69856200	Weak transcription	hESC Derived CD56+ Mesoderm Cultured Cells	ES cell derived
18	chr3:69849800-69869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
19	chr3:69850800-69855600	Weak transcription	Fetal Heart	heart
20	chr3:69851000-69852400	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Male	--
21	chr3:69851200-69852400	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:69851200-69852600	Weak transcription	Primary hematopoietic stem cells G-CSF-mobilized Female	--

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