Variant report

Variant	rs7650137
Chromosome Location	chr3:69857317-69857318
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69851811..69854439-chr3:69855052..69858049,3	K562	blood:
2	chr3:69845234..69848226-chr3:69856309..69859149,2	K562	blood:

Extended variants
information (count: 64 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:60)

rs_ID	r²[population]
rs1036051	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1036053	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs11715024	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11716900	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11717837	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs11917130	1.00[CEU][hapmap];0.84[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs12107678	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap]
rs12108009	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13066535	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs13066581	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs13320443	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13320724	1.00[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs13327273	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1367370	0.82[CHB][hapmap]
rs1430604	0.82[CHB][hapmap]
rs1430605	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs1430609	1.00[CEU][hapmap];0.94[CHB][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs1430610	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.87[YRI][hapmap]
rs1549744	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.81[YRI][hapmap]
rs1549746	0.82[CHB][hapmap]
rs17638538	0.82[CHB][hapmap]
rs1897159	0.82[CHB][hapmap]
rs2082173	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.85[YRI][hapmap]
rs2163326	0.82[CHB][hapmap]
rs2217456	0.96[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap]
rs4582066	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs6768731	0.87[YRI][hapmap]
rs6781171	0.87[YRI][hapmap]
rs6785975	0.96[CEU][hapmap];0.86[JPT][hapmap];0.85[YRI][hapmap]
rs6787022	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs6797168	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs6802804	0.88[CHB][hapmap]
rs6805306	0.88[CHB][hapmap]
rs7611020	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs7626629	0.87[YRI][hapmap]
rs7635551	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];0.95[YRI][hapmap]
rs7635653	1.00[CEU][hapmap];0.94[CHB][hapmap];0.93[JPT][hapmap];1.00[YRI][hapmap]
rs7647683	1.00[CEU][hapmap];0.94[CHB][hapmap];0.92[JPT][hapmap];1.00[YRI][hapmap]
rs9310172	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9310173	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9310176	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.83[YRI][hapmap]
rs9819504	0.87[YRI][hapmap]
rs9825023	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9825822	0.87[YRI][hapmap]
rs9828924	0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9829724	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9830086	0.88[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9838601	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9839093	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9845679	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9849488	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9855804	0.96[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9862205	1.00[CEU][hapmap];0.93[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9862680	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]
rs9864805	0.87[YRI][hapmap]
rs9864949	0.87[YRI][hapmap]
rs9871883	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];0.96[YRI][hapmap]
rs9876482	0.88[CEU][hapmap];0.91[YRI][hapmap]
rs9881320	0.96[CEU][hapmap];1.00[CHB][hapmap];1.00[JPT][hapmap];0.87[YRI][hapmap]
rs9883334	1.00[CEU][hapmap];0.94[CHB][hapmap];1.00[JPT][hapmap];1.00[YRI][hapmap]

Variant overlapped rSNPs/rCNVs (count:4 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	nsv1009045	chr3:69821621-69875782	Enhancers Weak transcription Flanking Active TSS Active TSS ZNF genes & repeats Genic enhancers	TF binding region CpG island Chromatin interactive region	3 gene(s)	inside rSNPs	diseases
4	nsv963517	chr3:69851683-69877360	Weak transcription Enhancers Active TSS Flanking Active TSS	Chromatin interactive region	n/a	inside rSNPs	diseases

No data

Chromatin state (count:29 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69841200-69857600	Weak transcription	Right Atrium	heart
2	chr3:69843400-69859800	Weak transcription	Left Ventricle	heart
3	chr3:69847400-69860600	Weak transcription	Aorta	Aorta
4	chr3:69848000-69857600	Weak transcription	Psoas Muscle	Psoas
5	chr3:69848800-69858600	Weak transcription	ES-I3 Cell Line	embryonic stem cell
6	chr3:69849800-69869000	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
7	chr3:69852800-69857800	Weak transcription	Lung	lung
8	chr3:69853400-69860600	Weak transcription	Primary monocytes fromperipheralblood	blood
9	chr3:69854200-69857600	Weak transcription	K562	blood
10	chr3:69854200-69858800	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:69855600-69858200	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
12	chr3:69855600-69858200	Enhancers	Fetal Heart	heart
13	chr3:69856200-69858600	Enhancers	Ovary	ovary
14	chr3:69856400-69857600	Weak transcription	Right Ventricle	heart
15	chr3:69856400-69857600	Weak transcription	Skeletal Muscle Female	skeletal muscle
16	chr3:69856400-69858000	Enhancers	HUVEC	blood vessel
17	chr3:69856600-69857600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
18	chr3:69856600-69857800	Weak transcription	Adipose Nuclei	Adipose
19	chr3:69856600-69857800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:69856600-69861000	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
21	chr3:69856800-69859800	Weak transcription	Brain Hippocampus Middle	brain
22	chr3:69856800-69860600	Weak transcription	Duodenum Smooth Muscle	Duodenum
23	chr3:69857000-69857800	Weak transcription	Fetal Lung	lung
24	chr3:69857000-69858000	Weak transcription	NHLF	lung
25	chr3:69857000-69858400	Weak transcription	Muscle Satellite Cultured Cells	--
26	chr3:69857000-69860400	Weak transcription	Rectal Smooth Muscle	rectum
27	chr3:69857000-69860600	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:69857200-69857600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
29	chr3:69857200-69857600	Weak transcription	Colon Smooth Muscle	Colon

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