Variant report

Variant	rs4855447
Chromosome Location	chr3:69803328-69803329
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69798311..69800015-chr3:69801658..69803370,2	K562	blood:

Extended variants
information (count: 30 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:27)

rs_ID	r²[population]
rs11128143	0.84[CHB][hapmap]
rs12714757	0.85[CEU][hapmap];0.90[CHB][hapmap];0.95[JPT][hapmap];0.80[AMR][1000 genomes];0.87[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs13314892	0.81[JPT][hapmap]
rs13318796	0.81[JPT][hapmap]
rs1367369	0.82[CHB][hapmap]
rs1549746	0.81[CEU][hapmap]
rs17006419	0.92[AMR][1000 genomes];0.86[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs17043851	0.85[CEU][hapmap];0.84[CHB][hapmap];0.95[JPT][hapmap];0.86[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs2114660	0.92[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs4605553	0.88[ASN][1000 genomes]
rs4855323	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55947901	0.86[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56286049	0.84[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs56386221	0.82[AMR][1000 genomes];0.83[ASN][1000 genomes]
rs57078287	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs57537586	0.84[AMR][1000 genomes];0.88[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs58244283	0.91[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs58529025	0.91[AMR][1000 genomes];0.86[EUR][1000 genomes]
rs60551165	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60843510	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs62250970	0.88[AMR][1000 genomes];0.87[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62250976	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes];0.82[ASN][1000 genomes]
rs62250977	0.91[AMR][1000 genomes];0.88[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs62250978	0.86[EUR][1000 genomes]
rs6772383	0.82[AMR][1000 genomes];0.84[ASN][1000 genomes]
rs6786207	0.80[CHB][hapmap]
rs9869047	0.81[JPT][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69795000-69810600	Weak transcription	Pancreas	Pancrea
2	chr3:69798000-69803400	Weak transcription	Right Atrium	heart
3	chr3:69798000-69810400	Weak transcription	K562	blood
4	chr3:69798400-69803600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:69800600-69809400	Weak transcription	Right Ventricle	heart
6	chr3:69801000-69809800	Weak transcription	Duodenum Smooth Muscle	Duodenum
7	chr3:69801200-69805800	Weak transcription	Psoas Muscle	Psoas
8	chr3:69801200-69810400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
9	chr3:69801400-69811000	Weak transcription	Stomach Smooth Muscle	stomach
10	chr3:69802000-69803800	Enhancers	Left Ventricle	heart
11	chr3:69802200-69806600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:69802400-69803400	Weak transcription	Lung	lung
13	chr3:69802400-69803400	Weak transcription	Monocytes-CD14+_RO01746	blood
14	chr3:69802400-69804000	Weak transcription	Ovary	ovary
15	chr3:69802400-69806200	Weak transcription	Colon Smooth Muscle	Colon
16	chr3:69802400-69806600	Weak transcription	Adipose Nuclei	Adipose
17	chr3:69802400-69806600	Weak transcription	Rectal Smooth Muscle	rectum
18	chr3:69802400-69809400	Weak transcription	A549	lung
19	chr3:69802600-69810800	Weak transcription	Skeletal Muscle Male	skeletal muscle
20	chr3:69802800-69811600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
21	chr3:69803200-69805200	Enhancers	Fetal Heart	heart

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