Variant report

Variant	rs9869047
Chromosome Location	chr3:69791738-69791739
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69791416..69793317-chr3:69809877..69811903,2	MCF-7	breast:
2	chr3:69788516..69790188-chr3:69791637..69793714,2	K562	blood:

Variant related genes	Relation type
ENSG00000187098	Chromatin interaction

Extended variants
information (count: 12 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:11)

rs_ID	r²[population]
rs13314892	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[JPT][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs13318796	0.88[CEU][hapmap];0.89[CHB][hapmap];1.00[CHD][hapmap];0.92[GIH][hapmap];1.00[JPT][hapmap];0.95[MEX][hapmap];1.00[TSI][hapmap];0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]
rs2114660	0.81[CEU][hapmap]
rs2315497	0.81[AFR][1000 genomes];0.84[AMR][1000 genomes];0.81[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs4855323	0.85[MEX][hapmap]
rs4855447	0.81[JPT][hapmap]
rs56386221	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs57078287	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs60843510	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]
rs6772383	0.93[AMR][1000 genomes];0.90[EUR][1000 genomes]
rs9817946	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.95[ASN][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:39 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69790000-69794800	Weak transcription	Gastric	stomach
2	chr3:69790200-69793600	Weak transcription	Pancreas	Pancrea
3	chr3:69790200-69794400	Weak transcription	Esophagus	oesophagus
4	chr3:69790200-69797400	Weak transcription	Rectal Mucosa Donor 31	rectum
5	chr3:69790400-69793200	Weak transcription	Primary monocytes fromperipheralblood	blood
6	chr3:69790400-69793600	Weak transcription	Monocytes-CD14+_RO01746	blood
7	chr3:69790400-69795200	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
8	chr3:69790600-69794400	Weak transcription	Brain Angular Gyrus	brain
9	chr3:69790600-69794400	Weak transcription	NHDF-Ad	bronchial
10	chr3:69790600-69794400	Weak transcription	NHLF	lung
11	chr3:69790600-69795200	Enhancers	Psoas Muscle	Psoas
12	chr3:69790600-69802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
13	chr3:69790800-69792600	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
14	chr3:69790800-69793600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
15	chr3:69790800-69794800	Weak transcription	Aorta	Aorta
16	chr3:69790800-69796200	Weak transcription	Brain Cingulate Gyrus	brain
17	chr3:69790800-69797400	Weak transcription	Brain Anterior Caudate	brain
18	chr3:69791000-69792000	Flanking Active TSS	K562	blood
19	chr3:69791000-69792200	Weak transcription	Adipose Nuclei	Adipose
20	chr3:69791000-69793200	Enhancers	Foreskin Melanocyte Primary Cells skin01	Skin
21	chr3:69791000-69794400	Enhancers	Colon Smooth Muscle	Colon
22	chr3:69791000-69796000	Weak transcription	Brain Substantia Nigra	brain
23	chr3:69791000-69796200	Enhancers	Rectal Smooth Muscle	rectum
24	chr3:69791000-69798200	Enhancers	Fetal Thymus	thymus
25	chr3:69791200-69791800	Enhancers	Right Ventricle	heart
26	chr3:69791200-69792000	Flanking Active TSS	Skeletal Muscle Female	skeletal muscle
27	chr3:69791200-69792200	Weak transcription	Right Atrium	heart
28	chr3:69791200-69792400	Enhancers	Duodenum Smooth Muscle	Duodenum
29	chr3:69791200-69794200	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
30	chr3:69791200-69794400	Weak transcription	Fetal Stomach	stomach
31	chr3:69791200-69794600	Weak transcription	Brain Hippocampus Middle	brain
32	chr3:69791200-69795200	Enhancers	Skeletal Muscle Male	skeletal muscle
33	chr3:69791400-69792000	Enhancers	H1 Derived Mesenchymal Stem Cells	ES cell derived
34	chr3:69791400-69792400	Enhancers	Stomach Smooth Muscle	stomach
35	chr3:69791400-69793400	Enhancers	Fetal Heart	heart
36	chr3:69791400-69795200	Enhancers	Ovary	ovary
37	chr3:69791600-69791800	Enhancers	Lung	lung
38	chr3:69791600-69793000	Enhancers	Left Ventricle	heart
39	chr3:69791600-69793400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived

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