Variant report

Variant	rs2114660
Chromosome Location	chr3:69803691-69803692
allele	A/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

Extended variants
information (count: 27 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:24)

rs_ID	r²[population]
rs12714757	0.93[CEU][hapmap];0.84[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs13314892	0.81[CEU][hapmap];0.82[AMR][1000 genomes]
rs13318796	0.82[AMR][1000 genomes]
rs17006419	0.96[AMR][1000 genomes];0.92[EUR][1000 genomes];0.91[ASN][1000 genomes]
rs17043851	0.93[CEU][hapmap];0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs4605553	0.89[ASN][1000 genomes]
rs4855323	0.93[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4855447	0.92[CEU][hapmap];1.00[YRI][hapmap];0.95[AFR][1000 genomes];0.96[AMR][1000 genomes];0.94[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs55947901	0.90[AMR][1000 genomes];0.92[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs56286049	0.87[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs56386221	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs57078287	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs57537586	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs58244283	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.81[ASN][1000 genomes]
rs58529025	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes];0.80[ASN][1000 genomes]
rs60551165	0.95[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs60843510	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62250970	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.90[ASN][1000 genomes]
rs62250976	0.87[AMR][1000 genomes];0.93[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs62250977	0.95[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs62250978	0.91[EUR][1000 genomes]
rs6772383	0.86[AMR][1000 genomes];0.82[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs9817946	0.82[AMR][1000 genomes]
rs9869047	0.81[CEU][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:21 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69795000-69810600	Weak transcription	Pancreas	Pancrea
2	chr3:69798000-69810400	Weak transcription	K562	blood
3	chr3:69800600-69809400	Weak transcription	Right Ventricle	heart
4	chr3:69801000-69809800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:69801200-69805800	Weak transcription	Psoas Muscle	Psoas
6	chr3:69801200-69810400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
7	chr3:69801400-69811000	Weak transcription	Stomach Smooth Muscle	stomach
8	chr3:69802000-69803800	Enhancers	Left Ventricle	heart
9	chr3:69802200-69806600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
10	chr3:69802400-69804000	Weak transcription	Ovary	ovary
11	chr3:69802400-69806200	Weak transcription	Colon Smooth Muscle	Colon
12	chr3:69802400-69806600	Weak transcription	Adipose Nuclei	Adipose
13	chr3:69802400-69806600	Weak transcription	Rectal Smooth Muscle	rectum
14	chr3:69802400-69809400	Weak transcription	A549	lung
15	chr3:69802600-69810800	Weak transcription	Skeletal Muscle Male	skeletal muscle
16	chr3:69802800-69811600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
17	chr3:69803200-69805200	Enhancers	Fetal Heart	heart
18	chr3:69803400-69804200	Enhancers	Right Atrium	heart
19	chr3:69803600-69803800	Weak transcription	Monocytes-CD14+_RO01746	blood
20	chr3:69803600-69809400	Weak transcription	Lung	lung
21	chr3:69803600-69809400	Weak transcription	Skeletal Muscle Female	skeletal muscle

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