Variant report

Variant	rs4605553
Chromosome Location	chr3:69802902-69802903
allele	A/G
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69798311..69800015-chr3:69801658..69803370,2	K562	blood:

Extended variants
information (count: 19 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs11128143	0.81[ASN][1000 genomes]
rs1367369	0.80[ASN][1000 genomes]
rs17006419	0.80[ASN][1000 genomes]
rs2114660	0.89[ASN][1000 genomes]
rs2116000	0.88[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs28378222	0.80[ASN][1000 genomes]
rs28613540	0.80[ASN][1000 genomes]
rs4855447	0.88[ASN][1000 genomes]
rs4855448	0.81[ASN][1000 genomes]
rs55921103	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs6762369	0.90[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs6785461	0.84[AMR][1000 genomes];0.87[EUR][1000 genomes]
rs6786207	0.89[AMR][1000 genomes];0.84[EUR][1000 genomes]
rs6786226	0.89[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs7648607	0.80[ASN][1000 genomes]
rs9834743	0.88[AMR][1000 genomes];0.90[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69795000-69810600	Weak transcription	Pancreas	Pancrea
2	chr3:69798000-69803400	Weak transcription	Right Atrium	heart
3	chr3:69798000-69810400	Weak transcription	K562	blood
4	chr3:69798400-69803600	Enhancers	Skeletal Muscle Female	skeletal muscle
5	chr3:69800400-69803200	Weak transcription	Fetal Heart	heart
6	chr3:69800600-69809400	Weak transcription	Right Ventricle	heart
7	chr3:69801000-69809800	Weak transcription	Duodenum Smooth Muscle	Duodenum
8	chr3:69801200-69805800	Weak transcription	Psoas Muscle	Psoas
9	chr3:69801200-69810400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
10	chr3:69801400-69811000	Weak transcription	Stomach Smooth Muscle	stomach
11	chr3:69802000-69803800	Enhancers	Left Ventricle	heart
12	chr3:69802200-69806600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
13	chr3:69802400-69803400	Weak transcription	Lung	lung
14	chr3:69802400-69803400	Weak transcription	Monocytes-CD14+_RO01746	blood
15	chr3:69802400-69804000	Weak transcription	Ovary	ovary
16	chr3:69802400-69806200	Weak transcription	Colon Smooth Muscle	Colon
17	chr3:69802400-69806600	Weak transcription	Adipose Nuclei	Adipose
18	chr3:69802400-69806600	Weak transcription	Rectal Smooth Muscle	rectum
19	chr3:69802400-69809400	Weak transcription	A549	lung
20	chr3:69802600-69810800	Weak transcription	Skeletal Muscle Male	skeletal muscle
21	chr3:69802800-69803200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
22	chr3:69802800-69803200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
23	chr3:69802800-69811600	Weak transcription	Primary hematopoietic stem cells short term culture	blood

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