Variant report

Variant	rs55921103
Chromosome Location	chr3:69810294-69810295
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Transcrition factor	Chromosome Location	Cell Line	Cell type	Cell Stage	Matched TF binding sites
1	E2F4	chr3:69810005-69810581	MCF10A-Er-Src	breast:	n/a	n/a

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69808353..69811258-chr3:69813608..69817584,3	K562	blood:
2	chr3:69796755..69798607-chr3:69808802..69811346,2	K562	blood:

Variant related genes	Relation type
MITF	TF binding region

Extended variants
information (count: 96 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:93)

rs_ID	r²[population]
rs1036051	0.81[EUR][1000 genomes]
rs1036052	0.81[EUR][1000 genomes]
rs1036053	0.81[EUR][1000 genomes]
rs11128143	0.87[ASN][1000 genomes]
rs11708183	0.83[EUR][1000 genomes]
rs11712880	0.84[EUR][1000 genomes]
rs11715024	0.83[EUR][1000 genomes]
rs11716900	0.83[EUR][1000 genomes]
rs11717837	0.83[EUR][1000 genomes]
rs11917130	0.84[EUR][1000 genomes]
rs11918650	0.83[EUR][1000 genomes]
rs12108009	0.83[EUR][1000 genomes]
rs12714757	0.83[ASN][1000 genomes]
rs13066535	0.83[EUR][1000 genomes]
rs13066581	0.83[EUR][1000 genomes]
rs13071707	0.81[EUR][1000 genomes]
rs13320443	0.84[EUR][1000 genomes]
rs13320724	0.84[EUR][1000 genomes]
rs13324851	0.84[EUR][1000 genomes]
rs13327273	0.84[EUR][1000 genomes]
rs1367369	0.86[ASN][1000 genomes]
rs1367371	0.82[EUR][1000 genomes]
rs1430605	0.82[EUR][1000 genomes]
rs1430609	0.83[EUR][1000 genomes]
rs1430610	0.83[EUR][1000 genomes]
rs1549744	0.81[EUR][1000 genomes]
rs17006419	0.88[ASN][1000 genomes]
rs17006493	0.83[EUR][1000 genomes]
rs1812075	0.82[EUR][1000 genomes]
rs2082173	0.82[EUR][1000 genomes]
rs2116000	0.86[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2116001	0.83[EUR][1000 genomes]
rs2163327	0.80[EUR][1000 genomes]
rs2217456	0.83[EUR][1000 genomes]
rs28378222	0.86[ASN][1000 genomes]
rs28613540	0.86[ASN][1000 genomes]
rs34162170	0.83[EUR][1000 genomes]
rs34579698	0.83[EUR][1000 genomes]
rs4582066	0.83[EUR][1000 genomes]
rs4605553	0.87[AMR][1000 genomes];0.94[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs4855323	0.86[ASN][1000 genomes]
rs4855448	0.80[AMR][1000 genomes];0.87[ASN][1000 genomes]
rs55761397	0.83[EUR][1000 genomes]
rs62250970	0.89[ASN][1000 genomes]
rs62251012	0.84[EUR][1000 genomes]
rs62252217	0.83[EUR][1000 genomes]
rs6762369	0.88[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6764340	0.84[EUR][1000 genomes]
rs6785461	0.80[AMR][1000 genomes];0.92[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs6785975	0.84[EUR][1000 genomes]
rs6786207	0.87[AMR][1000 genomes];0.90[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6786226	0.89[AMR][1000 genomes];0.96[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs6787022	0.83[EUR][1000 genomes]
rs6797168	0.83[EUR][1000 genomes]
rs7611020	0.84[EUR][1000 genomes]
rs7635551	0.83[EUR][1000 genomes]
rs7635653	0.83[EUR][1000 genomes]
rs7642834	0.81[EUR][1000 genomes]
rs7645126	0.84[EUR][1000 genomes]
rs7647683	0.84[EUR][1000 genomes]
rs7648607	0.86[ASN][1000 genomes]
rs930135	0.83[EUR][1000 genomes]
rs9310172	0.82[EUR][1000 genomes]
rs9310173	0.82[EUR][1000 genomes]
rs9310176	0.81[EUR][1000 genomes]
rs9824497	0.83[EUR][1000 genomes]
rs9824528	0.83[EUR][1000 genomes]
rs9825023	0.83[EUR][1000 genomes]
rs9825799	0.83[EUR][1000 genomes]
rs9828215	0.83[EUR][1000 genomes]
rs9828924	0.83[EUR][1000 genomes]
rs9829056	0.83[EUR][1000 genomes]
rs9829724	0.81[EUR][1000 genomes]
rs9830086	0.83[EUR][1000 genomes]
rs9831839	0.83[EUR][1000 genomes]
rs9834743	0.88[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs9836493	0.83[EUR][1000 genomes]
rs9836575	0.83[EUR][1000 genomes]
rs9838601	0.84[EUR][1000 genomes]
rs9839093	0.84[EUR][1000 genomes]
rs9839120	0.83[EUR][1000 genomes]
rs9845679	0.83[EUR][1000 genomes]
rs9849488	0.83[EUR][1000 genomes]
rs9855804	0.83[EUR][1000 genomes]
rs9855819	0.83[EUR][1000 genomes]
rs9857999	0.82[EUR][1000 genomes]
rs9862205	0.84[EUR][1000 genomes]
rs9862680	0.84[EUR][1000 genomes]
rs9871883	0.84[EUR][1000 genomes]
rs9876482	0.83[EUR][1000 genomes]
rs9881217	0.83[EUR][1000 genomes]
rs9881320	0.83[EUR][1000 genomes]
rs9883334	0.83[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:31 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69795000-69810600	Weak transcription	Pancreas	Pancrea
2	chr3:69798000-69810400	Weak transcription	K562	blood
3	chr3:69801200-69810400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
4	chr3:69801400-69811000	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:69802600-69810800	Weak transcription	Skeletal Muscle Male	skeletal muscle
6	chr3:69802800-69811600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
7	chr3:69804200-69812600	Weak transcription	Right Atrium	heart
8	chr3:69805200-69814000	Weak transcription	Gastric	stomach
9	chr3:69806200-69818000	Enhancers	Fetal Heart	heart
10	chr3:69806400-69811600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
11	chr3:69806800-69810600	Weak transcription	Brain Hippocampus Middle	brain
12	chr3:69807000-69810800	Weak transcription	Adipose Nuclei	Adipose
13	chr3:69807200-69810400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
14	chr3:69808200-69810600	Weak transcription	Breast variant Human Mammary Epithelial Cells (vHMEC)	Breast
15	chr3:69809400-69810600	Enhancers	A549	lung
16	chr3:69809400-69813000	Enhancers	Ovary	ovary
17	chr3:69809400-69814400	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
18	chr3:69809400-69814400	Enhancers	Psoas Muscle	Psoas
19	chr3:69809600-69811600	Enhancers	Hela-S3	cervix
20	chr3:69809600-69811600	Enhancers	NHLF	lung
21	chr3:69809800-69810800	Weak transcription	Colon Smooth Muscle	Colon
22	chr3:69809800-69810800	Weak transcription	Right Ventricle	heart
23	chr3:69809800-69813200	Enhancers	Duodenum Smooth Muscle	Duodenum
24	chr3:69810000-69810400	Weak transcription	hESC Derived CD184+ Endoderm Cultured Cells	ES cell derived
25	chr3:69810000-69810400	Weak transcription	Skeletal Muscle Female	skeletal muscle
26	chr3:69810000-69811600	Weak transcription	Left Ventricle	heart
27	chr3:69810000-69811800	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
28	chr3:69810000-69812200	Weak transcription	Brain Inferior Temporal Lobe	brain
29	chr3:69810000-69815800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived
30	chr3:69810200-69810600	Weak transcription	Fetal Kidney	kidney
31	chr3:69810200-69814000	Enhancers	Rectal Smooth Muscle	rectum

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