Variant report

Variant	rs4855323
Chromosome Location	chr3:69807905-69807906
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69807141..69809235-chr3:69812305..69815051,2	MCF-7	breast:
2	chr3:69787819..69789411-chr3:69806513..69808155,2	K562	blood:

Variant related genes	Relation type
ENSG00000187098	Chromatin interaction

Extended variants
information (count: 36 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:33)

rs_ID	r²[population]
rs11128143	0.82[CHB][hapmap];0.81[JPT][hapmap]
rs12714757	1.00[CEU][hapmap];0.86[CHB][hapmap];0.91[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.85[MEX][hapmap];0.92[TSI][hapmap];0.86[AMR][1000 genomes];0.94[EUR][1000 genomes];0.92[ASN][1000 genomes]
rs13314892	0.87[CEU][hapmap]
rs13318796	0.87[CEU][hapmap];0.89[MEX][hapmap]
rs1367369	0.85[JPT][hapmap]
rs1430604	0.86[CEU][hapmap];0.88[GIH][hapmap];0.91[MKK][hapmap]
rs1549746	0.83[CEU][hapmap]
rs17006419	0.99[AMR][1000 genomes];0.95[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs17043851	1.00[CEU][hapmap];0.81[CHB][hapmap];0.88[CHD][hapmap];1.00[GIH][hapmap];1.00[JPT][hapmap];0.89[MEX][hapmap];0.97[TSI][hapmap];0.92[AMR][1000 genomes];0.95[EUR][1000 genomes];0.84[ASN][1000 genomes]
rs17638538	0.86[CEU][hapmap];0.82[MKK][hapmap]
rs1897159	0.86[CEU][hapmap]
rs2114660	0.93[CEU][hapmap];0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs2163326	0.86[CEU][hapmap];0.91[GIH][hapmap];0.89[MKK][hapmap]
rs4855447	0.85[CEU][hapmap];0.95[CHB][hapmap];0.95[JPT][hapmap];0.93[AMR][1000 genomes];0.91[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs55921103	0.86[ASN][1000 genomes]
rs55947901	0.92[AMR][1000 genomes];0.93[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs56286049	0.90[AMR][1000 genomes];0.93[EUR][1000 genomes]
rs56386221	0.84[AMR][1000 genomes]
rs57078287	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs57537586	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs58244283	0.97[AMR][1000 genomes];0.97[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs58529025	0.97[AMR][1000 genomes];0.94[EUR][1000 genomes];0.86[ASN][1000 genomes]
rs60551165	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.83[ASN][1000 genomes]
rs60843510	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs62250970	0.95[AMR][1000 genomes];0.96[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs62250976	0.90[AMR][1000 genomes];0.96[EUR][1000 genomes];0.87[ASN][1000 genomes]
rs62250977	0.97[AMR][1000 genomes];0.96[EUR][1000 genomes];0.88[ASN][1000 genomes]
rs62250978	0.93[EUR][1000 genomes]
rs6772383	0.84[AMR][1000 genomes]
rs6802804	0.86[CEU][hapmap];0.88[GIH][hapmap];0.91[MKK][hapmap]
rs6805306	0.86[CEU][hapmap]
rs7648607	0.82[JPT][hapmap]
rs9869047	0.85[MEX][hapmap]

Variant overlapped rSNPs/rCNVs (count:3 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
3	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:23 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69795000-69810600	Weak transcription	Pancreas	Pancrea
2	chr3:69798000-69810400	Weak transcription	K562	blood
3	chr3:69800600-69809400	Weak transcription	Right Ventricle	heart
4	chr3:69801000-69809800	Weak transcription	Duodenum Smooth Muscle	Duodenum
5	chr3:69801200-69810400	Weak transcription	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
6	chr3:69801400-69811000	Weak transcription	Stomach Smooth Muscle	stomach
7	chr3:69802400-69809400	Weak transcription	A549	lung
8	chr3:69802600-69810800	Weak transcription	Skeletal Muscle Male	skeletal muscle
9	chr3:69802800-69811600	Weak transcription	Primary hematopoietic stem cells short term culture	blood
10	chr3:69803600-69809400	Weak transcription	Lung	lung
11	chr3:69803600-69809400	Weak transcription	Skeletal Muscle Female	skeletal muscle
12	chr3:69804200-69812600	Weak transcription	Right Atrium	heart
13	chr3:69805200-69814000	Weak transcription	Gastric	stomach
14	chr3:69806200-69818000	Enhancers	Fetal Heart	heart
15	chr3:69806400-69811600	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
16	chr3:69806600-69808000	Enhancers	Rectal Smooth Muscle	rectum
17	chr3:69806800-69810600	Weak transcription	Brain Hippocampus Middle	brain
18	chr3:69807000-69810800	Weak transcription	Adipose Nuclei	Adipose
19	chr3:69807200-69809400	Weak transcription	Psoas Muscle	Psoas
20	chr3:69807200-69810400	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
21	chr3:69807600-69808200	Enhancers	Colon Smooth Muscle	Colon
22	chr3:69807600-69809400	Weak transcription	Left Ventricle	heart
23	chr3:69807600-69809400	Weak transcription	Ovary	ovary

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