Variant report

Variant	rs57078287
Chromosome Location	chr3:69799798-69799799
allele	G/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69798311..69800015-chr3:69801658..69803370,2	K562	blood:
2	chr3:69794951..69797819-chr3:69799662..69801959,2	K562	blood:

Extended variants
information (count: 17 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:16)

rs_ID	r²[population]
rs13314892	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs13318796	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs17006419	0.82[AMR][1000 genomes]
rs2114660	0.86[AMR][1000 genomes];0.84[EUR][1000 genomes];0.85[ASN][1000 genomes]
rs2315497	0.81[AFR][1000 genomes];0.81[AMR][1000 genomes]
rs4855323	0.84[AMR][1000 genomes];0.81[EUR][1000 genomes]
rs4855447	0.82[AMR][1000 genomes];0.85[ASN][1000 genomes]
rs56386221	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.97[ASN][1000 genomes]
rs58244283	0.84[AMR][1000 genomes]
rs58529025	0.84[AMR][1000 genomes]
rs60551165	0.84[AMR][1000 genomes]
rs60843510	0.98[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes];0.99[ASN][1000 genomes]
rs62250977	0.84[AMR][1000 genomes]
rs6772383	1.00[AMR][1000 genomes];0.99[EUR][1000 genomes];0.98[ASN][1000 genomes]
rs9817946	0.95[AMR][1000 genomes];0.91[EUR][1000 genomes]
rs9869047	0.93[AMR][1000 genomes];0.88[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:1 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	nsv834723	chr3:69643641-69811601	Enhancers Weak transcription Active TSS Flanking Active TSS Bivalent/Poised TSS Bivalent Enhancer Flanking Bivalent TSS/Enh ZNF genes & repeats Genic enhancers Strong transcription	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:37 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69790600-69802200	Weak transcription	Brain Dorsolateral Prefrontal Cortex	brain
2	chr3:69794200-69801200	Enhancers	IMR90 fetal lung fibroblasts Cell Line	lung
3	chr3:69794400-69800400	Enhancers	Fetal Heart	heart
4	chr3:69795000-69801600	Enhancers	Colon Smooth Muscle	Colon
5	chr3:69795000-69802000	Weak transcription	Lung	lung
6	chr3:69795000-69802200	Weak transcription	Esophagus	oesophagus
7	chr3:69795000-69810600	Weak transcription	Pancreas	Pancrea
8	chr3:69795600-69801200	Enhancers	Psoas Muscle	Psoas
9	chr3:69795800-69801000	Enhancers	Duodenum Smooth Muscle	Duodenum
10	chr3:69796200-69801200	Enhancers	Adipose Derived Mesenchymal Stem Cell Cultured Cells	ES cell derived
11	chr3:69796200-69802200	Enhancers	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
12	chr3:69796400-69799800	Weak transcription	Duodenum Mucosa	Duodenum
13	chr3:69796800-69800400	Weak transcription	Brain Substantia Nigra	brain
14	chr3:69797200-69799800	Weak transcription	Right Ventricle	heart
15	chr3:69797200-69801000	Enhancers	Rectal Smooth Muscle	rectum
16	chr3:69797200-69802200	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
17	chr3:69797800-69799800	Weak transcription	Rectal Mucosa Donor 31	rectum
18	chr3:69797800-69802000	Weak transcription	Primary hematopoietic stem cells	blood
19	chr3:69798000-69799800	Weak transcription	Foreskin Melanocyte Primary Cells skin03	Skin
20	chr3:69798000-69800400	Weak transcription	Left Ventricle	heart
21	chr3:69798000-69802000	Weak transcription	Foreskin Fibroblast Primary Cells skin01	Skin
22	chr3:69798000-69802000	Weak transcription	Foreskin Fibroblast Primary Cells skin02	Skin
23	chr3:69798000-69802400	Enhancers	Monocytes-CD14+_RO01746	blood
24	chr3:69798000-69803400	Weak transcription	Right Atrium	heart
25	chr3:69798000-69810400	Weak transcription	K562	blood
26	chr3:69798200-69800800	Weak transcription	Brain Hippocampus Middle	brain
27	chr3:69798400-69802000	Weak transcription	A549	lung
28	chr3:69798400-69803600	Enhancers	Skeletal Muscle Female	skeletal muscle
29	chr3:69798600-69802200	Weak transcription	Primary hematopoietic stem cells short term culture	blood
30	chr3:69799000-69801400	Enhancers	Ovary	ovary
31	chr3:69799000-69802200	Weak transcription	Aorta	Aorta
32	chr3:69799000-69802400	Enhancers	Primary monocytes fromperipheralblood	blood
33	chr3:69799400-69800400	Weak transcription	Skeletal Muscle Male	skeletal muscle
34	chr3:69799600-69800000	Weak transcription	Stomach Smooth Muscle	stomach
35	chr3:69799600-69800000	Weak transcription	NHLF	lung
36	chr3:69799600-69800600	Enhancers	NHDF-Ad	bronchial
37	chr3:69799600-69802400	Enhancers	Adipose Nuclei	Adipose

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