Variant report

Variant	rs9867045
Chromosome Location	chr3:69909425-69909426
allele	C/T
Outlinks	Ensembl UCSC

Chromatin state
Related regulatory elements
Target genes
Other information

No.	Distal block	Cell Line	Cell type	Cell Stage
1	chr3:69903186..69905172-chr3:69908164..69910462,2	K562	blood:
2	chr3:69906845..69909617-chr3:69910481..69913820,3	K562	blood:

Extended variants
information (count: 72 )
Associated
traits (count: 0)

rSNPs within LD-proxies of this variant (count:70)

rs_ID	r²[population]
rs1367370	0.84[CEU][hapmap];0.83[EUR][1000 genomes]
rs1430604	0.83[EUR][1000 genomes]
rs1549745	0.82[EUR][1000 genomes]
rs1549746	0.91[CEU][hapmap];0.91[EUR][1000 genomes]
rs1897159	0.83[EUR][1000 genomes]
rs2014255	0.83[EUR][1000 genomes]
rs2163326	0.84[EUR][1000 genomes]
rs55735918	0.83[EUR][1000 genomes]
rs55738162	0.82[EUR][1000 genomes]
rs55808455	0.83[EUR][1000 genomes]
rs55890624	0.82[EUR][1000 genomes]
rs55946371	0.83[EUR][1000 genomes]
rs56007401	0.83[EUR][1000 genomes]
rs56099248	0.90[EUR][1000 genomes]
rs56155813	0.84[EUR][1000 genomes]
rs56764448	0.83[EUR][1000 genomes]
rs56927902	0.82[EUR][1000 genomes]
rs57317066	0.83[EUR][1000 genomes]
rs57634646	0.83[EUR][1000 genomes]
rs57788691	0.84[EUR][1000 genomes]
rs57829272	0.82[EUR][1000 genomes]
rs58711181	0.84[EUR][1000 genomes]
rs59487570	0.83[EUR][1000 genomes]
rs59846970	0.83[EUR][1000 genomes]
rs60438183	0.84[EUR][1000 genomes]
rs61148813	0.83[EUR][1000 genomes]
rs62250980	0.81[EUR][1000 genomes]
rs62250981	0.81[EUR][1000 genomes]
rs62250982	0.81[EUR][1000 genomes]
rs62251009	0.82[EUR][1000 genomes]
rs62251019	0.82[EUR][1000 genomes]
rs62251025	0.82[EUR][1000 genomes]
rs62251026	0.82[EUR][1000 genomes]
rs62251027	0.82[EUR][1000 genomes]
rs62251029	0.82[EUR][1000 genomes]
rs62251030	0.82[EUR][1000 genomes]
rs62251031	0.82[EUR][1000 genomes]
rs62251032	0.82[EUR][1000 genomes]
rs62251033	0.82[EUR][1000 genomes]
rs62251040	0.82[EUR][1000 genomes]
rs62252174	0.83[EUR][1000 genomes]
rs62252182	0.84[EUR][1000 genomes]
rs62252218	0.83[EUR][1000 genomes]
rs62252219	0.83[EUR][1000 genomes]
rs62252226	0.83[EUR][1000 genomes]
rs62252228	0.83[EUR][1000 genomes]
rs62252229	0.83[EUR][1000 genomes]
rs62252230	0.83[EUR][1000 genomes]
rs62252232	0.83[EUR][1000 genomes]
rs62252233	0.83[EUR][1000 genomes]
rs62252234	0.83[EUR][1000 genomes]
rs62252237	0.81[EUR][1000 genomes]
rs62252238	0.83[EUR][1000 genomes]
rs62252239	0.84[EUR][1000 genomes]
rs62252240	0.83[EUR][1000 genomes]
rs62253174	0.82[EUR][1000 genomes]
rs62253176	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62253177	0.94[AMR][1000 genomes];0.98[EUR][1000 genomes]
rs62253178	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62253179	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62253180	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62253181	0.89[AMR][1000 genomes];0.94[EUR][1000 genomes]
rs62253182	0.89[AMR][1000 genomes];0.92[EUR][1000 genomes]
rs62253183	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs62253185	0.91[AMR][1000 genomes];0.95[EUR][1000 genomes]
rs6800508	0.83[EUR][1000 genomes]
rs6802804	0.82[EUR][1000 genomes]
rs6805306	0.82[EUR][1000 genomes]
rs7623486	1.00[CEU][hapmap];0.86[CHB][hapmap];1.00[YRI][hapmap];0.99[AFR][1000 genomes];1.00[AMR][1000 genomes];1.00[EUR][1000 genomes]
rs7647742	0.82[EUR][1000 genomes]

Variant overlapped rSNPs/rCNVs (count:2 , 50 per page) page: 1

No.	Variant name	Chromosome position	Chromatin state	Related regulatory elements	Target genes	Extended variants	Associated traits
1	esv3507784	chr3:69802539-69959607	Enhancers Active TSS Flanking Active TSS Weak transcription ZNF genes & repeats Strong transcription Genic enhancers Flanking Bivalent TSS/Enh Bivalent Enhancer Bivalent/Poised TSS	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases
2	esv3507785	chr3:69802539-69959607	Weak transcription Enhancers Flanking Active TSS ZNF genes & repeats Active TSS Genic enhancers Bivalent Enhancer Strong transcription Bivalent/Poised TSS Flanking Bivalent TSS/Enh	TF binding region CpG island Chromatin interactive region lncRNA	3 gene(s)	inside rSNPs	diseases

No data

Chromatin state (count:28 , 50 per page) page: 1

No.	Chromosome Location	Chromatin state	Cell line	Tissue
1	chr3:69895200-69913600	Weak transcription	Aorta	Aorta
2	chr3:69898000-69914800	Weak transcription	Right Ventricle	heart
3	chr3:69898400-69912800	Enhancers	Fetal Heart	heart
4	chr3:69900800-69910200	Weak transcription	Stomach Smooth Muscle	stomach
5	chr3:69904000-69913000	Enhancers	Foreskin Melanocyte Primary Cells skin03	Skin
6	chr3:69904400-69910600	Weak transcription	Left Ventricle	heart
7	chr3:69905200-69910600	Weak transcription	Right Atrium	heart
8	chr3:69905200-69911400	Weak transcription	Adipose Nuclei	Adipose
9	chr3:69905400-69910600	Weak transcription	Psoas Muscle	Psoas
10	chr3:69905400-69913600	Weak transcription	Ovary	ovary
11	chr3:69905400-69913800	Weak transcription	Duodenum Smooth Muscle	Duodenum
12	chr3:69905600-69915000	Weak transcription	Brain Inferior Temporal Lobe	brain
13	chr3:69905800-69915000	Weak transcription	HSMM	muscle
14	chr3:69906000-69910200	Weak transcription	Brain Hippocampus Middle	brain
15	chr3:69906200-69910600	Weak transcription	Brain Cingulate Gyrus	brain
16	chr3:69906400-69910000	Weak transcription	Brain Substantia Nigra	brain
17	chr3:69906400-69912000	Weak transcription	Fetal Lung	lung
18	chr3:69906400-69913800	Weak transcription	Skeletal Muscle Female	skeletal muscle
19	chr3:69906400-69915000	Weak transcription	Brain Angular Gyrus	brain
20	chr3:69906600-69909800	Weak transcription	Colon Smooth Muscle	Colon
21	chr3:69906600-69910600	Weak transcription	IMR90 fetal lung fibroblasts Cell Line	lung
22	chr3:69906600-69913400	Weak transcription	NHLF	lung
23	chr3:69906800-69910000	Weak transcription	Rectal Smooth Muscle	rectum
24	chr3:69906800-69910600	Weak transcription	Mesenchymal Stem Cell Derived Adipocyte Cultured Cells	ES cell derived
25	chr3:69906800-69910600	Weak transcription	Skeletal Muscle Male	skeletal muscle
26	chr3:69908400-69913400	Weak transcription	A549	lung
27	chr3:69908800-69910000	Weak transcription	Foreskin Melanocyte Primary Cells skin01	Skin
28	chr3:69908800-69914800	Weak transcription	H1 Derived Mesenchymal Stem Cells	ES cell derived

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